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docs: fix macrostate counts and simulation time in plots.md captions#39

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biofe merged 1 commit into
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worktree-session2
May 31, 2026
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docs: fix macrostate counts and simulation time in plots.md captions#39
biofe merged 1 commit into
masterfrom
worktree-session2

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@biofe biofe commented May 31, 2026

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Summary

  • Update macrostate counts from 12 → 14 in all HP35 example captions that use the reduced test dataset (dendrogram, sankey, contacts, macrotraj, state network, transition matrix, transition time)
  • Sankey caption: "14 vs 12" → "14 vs 14" (both KL/none and T/none reference give 14 macrostates from test data)
  • Macrostate trajectory caption: ~60 µs → ~300 µs
  • Intro paragraph: note that most examples use the reduced test dataset (14 macrostates); CK test uses the full dataset (12 macrostates)
  • CK test caption unchanged (correctly shows 12 macrostates from full data)

@biofe biofe merged commit a4dfc83 into master May 31, 2026
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@biofe biofe deleted the worktree-session2 branch May 31, 2026 14:57
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