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Read headers are incomplete when all fragments within a chunk are shorter than fraglen

Status: Open.

#86 In alyssafrazee/polyester;

· MarcelloMalpighi opened on May 11, 2026

Question about run time length

Status: Open.

#83 In alyssafrazee/polyester;

· cmill221 opened on Apr 16, 2023

Exact number for reads_per_transcript simulated reads

Status: Open.

#81 In alyssafrazee/polyester;

· Glenn032787 opened on Aug 15, 2022

simulate_experiment discrepancy in basemean values for simulated data

Status: Open.

#80 In alyssafrazee/polyester;

· vavouri-lab opened on Jun 8, 2022

Specifying Number of Reads Overall

Status: Open.

#79 In alyssafrazee/polyester;

· nmshahir opened on Dec 8, 2021

Simulation of error-free reads

Status: Open.

#77 In alyssafrazee/polyester;

· hl-xue opened on Oct 6, 2021

Support for GFF3

Status: Open.

#76 In alyssafrazee/polyester;

· TBooker opened on Aug 27, 2021

Typo in the documentation re fold_changes in simulate_experiment

Status: Open.

#72 In alyssafrazee/polyester;

· ning-y opened on Aug 23, 2020

error in function simulate_experiment_countmat

Status: Open.

#71 In alyssafrazee/polyester;

· mhjiang97 opened on Aug 12, 2020

simulate_experiment() fails when idfield (default: "transcript_id") is not present in the first line of the gtf file

Status: Open.

#68 In alyssafrazee/polyester;

· alorchhota opened on Oct 9, 2019

GCbias discrepancy

Status: Open.

#67 In alyssafrazee/polyester;

· Glfrey opened on Aug 9, 2019

A few suggestions

Status: Open.

#66 In alyssafrazee/polyester;

· sagnikbanerjee15 opened on Apr 3, 2019