Release STREAMLINE v1.0.0: P1-P11 pipeline, multiclass/regression support, new features and overhaul

.github/workflows/documentation.yml

@@ -4,10 +4,10 @@ jobs:
   docs:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v2
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         with:
-          python-version: '3.9'
+          python-version: '3.11'
       - name: Install dependencies
         run: |
           pip install -r requirements.txt
@@ -21,7 +21,7 @@ jobs:
         id: extract_branch
       - name: Deploy
         uses: peaceiris/actions-gh-pages@v3
-        if: ${{ github.event_name == 'push' && (github.ref == 'refs/heads/dev' || github.ref == 'refs/heads/main') }}
+        if: ${{ github.event_name == 'push' && (github.ref == 'refs/heads/v3' || github.ref == 'refs/heads/main') }}
         with:
           publish_branch: gh-pages
           github_token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/pytest.yml

@@ -6,13 +6,17 @@ jobs:
   build:
 
     runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.11", "3.12"]
 
     steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v2
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
       with:
-        python-version: "3.9"
+        python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

.gitignore

@@ -1,31 +1,39 @@
 .DS_Store
 .idea
+.vscode
+.pylintrc
 .ipynb_checkpoints/
 *.pyc
 __pycache__
 .pytest_cache
 demo/
+demo_old/
 catboost_info/
+./tests/*
+testlogs/
 dask_logs/
 OUTPUT/
+OSA_OUTPUT/
+OSA/
 docs/build/
+job_old.e
 job.o
 job.e
 logs.log
+Scratchpad.ipynb
 UserData/
 UserRepData/
 UserOutput/
 DemoOutput/
 DemoOutputLocal/
 OSAData/
-tests/
+/test/
+/tests/
+/out/
 OSAData.zip
 multiplexer_dataset/
 gametes_dataset/
 run_configs/cedars_amd.cfg
 data/AMD_Final/*
 data/PLCO/*
 run_configs/cedars_plco.cfg
-run_configs/cedars_gametes.cfg
-exp_configs/
-exp_data/