PR towards STREAMLINE next release: P1-P11 pipeline, multiclass/regression support, new features and overhaul - #8

Merged

raptor419 merged 111 commits into

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Jul 8, 2026

Commits on Jul 7, 2026

All completed phases till phase 3, from scratch
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All completed phases till phase 3, from scratch
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All completed phases till phase 3, from scratch
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All completed phases till phase 3, from scratch
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Added README to edit
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Code for feature importance
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correction in p4 pytests
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Edit to feature importance output structure.
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Phase 5 complete, w/o tests.
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All model class files
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added phase 6 modelling phase (with model calibration)
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tests for phase 5 and phase 6
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Runner Corrections till P4
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P6 Ensemble Phase Intial Push (not tested)
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Minor edits to p6 initial push
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added clarification comment on self.cv for clarity
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new stacking models
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addded meta_train_source parameter for stacking ensemble.
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added extra function to remove mlxtend class if needed.
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sample report app
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files for statistics phase.
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corrections to modelling phase, in loader and duplicate calibration in both modeljob and base model files
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added additional testing for p2 and p6
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added additional testing for p2 and p6
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remnamed test files
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added ensembles to statistics phase
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p7 p8, tested and corrections
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added heros algorithm
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added model_params_json to params additional model params as jsons strings
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added brier score other metrics with macro options
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rename p8 to summary_statistics
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edits to metrics, added brier score and corrections
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added ripper
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week updates: moved from metric pickles to jsons
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moved ploting to util files
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moved fi and regression plots to util files
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added multiclass_average to runners and cli
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minor correction for fi plots
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added brier score to multiclass
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edited pytests
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corrections after pytest
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edits to comments
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phase 9 compare initial tested
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p10 initial stub (in progress)
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added ensemble phase to datacompaisions
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reporting phase stub (dev in parallel with rep phase)
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initial push for reporting phase test
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corrected p11 jobsubmit for hpc
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added multiclass support to ensemble phase and tested basic local cli
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restructured pytests, added a complete test using demodata
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streamlit dashboard intial push
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new PDF report codes
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additional edits to PDF report
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Good attempt at report phase.
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added tabfpn
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progress/changes to reporting phase
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imporved spacing in pdf report
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additional edits for formatting
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edited text to make it more readable
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corrected feature importance figures in report
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new regression testing stubs
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various corrections for regression, added brier score to ensembles
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regression reporting added
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changed to median for FI Graphs
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corrected weighted FI plot for regression
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replication phase, and intitial test
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replication phase completed
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added replication report to P11
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added old notebook
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New Colab Notebook
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added notebook
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added figures in the notebooks
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stubss, and initial updates to useful note
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corrected all useful notebook
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updated notebooks and corrected skrebate numeric problem
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added compatiblity for newer sklearn
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added google colab notebook
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updated readme and run commands
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multiple fixes throughout the phases
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added param recall from prev phases
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added native cat model, no skill correction and oputna report
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added new datasets
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added new datasets and updated the notebooks
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changed to more complex UCI datasets and changed code thoughout
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edited replication datasets
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Added SMOTE to P2
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added pipeline runner, changed config and upgraded collab notebook, edited reports
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added changes to saving params for report
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added changes to saving params for report
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updated front page for report
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added ExSTraCS categorical support
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added some more instance subset code
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more edits to report
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edites to report
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edited reporting removed boxes for figures
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added documentation
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updated skrebate to 0.8.2 and added categorical labels to feat selection
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removed python 1.26 code from notebooks
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changed model_type to output type in P6 and other changes
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added parallel as a run mode
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parallelized to cv level and debugged heros and tabfpn
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Resolve notebook directory casing for v3
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Updates to colab notebooks
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more updates to notebooks
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more updates to notebook
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more update to notebooks
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updated pytests and removed main streamline files not needed
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removed more old streamline files
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edited documentation
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more edits to documentation
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Commits on Jul 8, 2026

made changes to version numbers and docs
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Commits

Commits on Jul 7, 2026

Commits on Jul 8, 2026