Homepage for my research group as an example of LYX Jekyll Theme.

pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:

Computational statistical mechanics of field-responsive polymer chains

Python code to model spinodal decomposition using the Cahn-Hilliard equation.

A Python-based tool to automatically generate LAMMPS configurations and input files for polymer-solvent systems with optional crosslinking and crowding effects.

A Python package for managing polymer physics and molecular dynamics projects, focusing on computational modeling of bacterial chromosome organization.

Code to model active loop extrusion on chromatin using hybrid MD-MC.

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Fit sticky-reptation model to experimental linear viscoelasticity data

# UNIFIED_QG: Unified Quantum Gravity Pipeline

Verification framework for LQG-enhanced warp bubble energy optimizations with reproducible computational methods and stability analysis.

Single polymer chain simulation; linear or circular configuration, optional and adjustable excluded volume force.

# Polymer Fusion Framework

Code used for publication in Physical Review E: "Polymer dynamics under tension: Mean first passage time for looping", by Wout Laeremans, Anne Floor den Ouden, Jef Hooyberghs and Wouter G. Ellenbroek.

# Unified LQG-QFT Framework Supporting LQG FTL Metric Engineering

A comprehensive Python toolkit for fiber network generation, simulation, and analysis | 面向材料科学研究的完整纤维网络结构生成、模拟与分析 Python 工具包

PyHeteroMap: A python package that maps and analyzes the conformational ensembles of Intrinsically Disordered Proteins (IDPs) from simulations.

Simulation and data analysis of braided Kremer-Grest multipolymeric systems

a tool for the analysis of multiplexed FISH (Fluorescence In Situ Hybridization) data

Code used for publication in Physical Review Research: "Theoretical models for tension-dependent DNA looping time", by Wout Laeremans and Wouter G. Ellenbroek.