adnanhaider81 / pathogen-discovery-pipeline Star 1 Code Issues Pull requests Panel driven metagenomic confirmatory mapping pipeline with host subtraction and competitive mapping for bacteria, viruses, fungi, and parasites shell bioinformatics metagenomics public-health pathogen-genomics pathogen-discovery competitive-mapping host-subtraction Updated Jun 1, 2026 Shell
Qasim-Hussain-Code / competitive_metagenomic_read_recruitment_workflow Star 0 Code Issues Pull requests An automated Anvi'o v9 Snakemake workflow for competitive metagenomic read recruitment. Resolves conserved sequence homologies to enable strain-level taxonomic profiling, population-level abundance estimation, and genome detection limits across environmental samples. snakemake metagenomics population-genomics comparative-genomics samtools sequence-alignment bowtie2 microbiome-analysis microbial-ecology anvio strain-level-profiling competitive-mapping read-recruitment Updated Jul 7, 2026 Shell