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build(deps): bump @zip.js/zip.js from 2.7.62 to 2.23.0 #969

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Merged
Aayam Bansal (aayambansal) merged 2 commits into from
Oct 9, 2026
Merged

build(deps): bump @zip.js/zip.js from 2.7.62 to 2.23.0 #969

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486913e
build(deps): bump @zip.js/zip.js from 2.7.62 to 2.23.0
dependabot[bot] Oct 9, 2026
ff33ea3
fix(bionemo): narrow zip entries to files for zip.js 2.23
aayambansal Oct 9, 2026
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2 changes: 1 addition & 1 deletion backend/cli/package.json
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Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,7 @@
"@synsci/plugin": "workspace:*",
"@synsci/sdk": "workspace:*",
"@synsci/util": "workspace:*",
"@zip.js/zip.js": "2.7.62",
"@zip.js/zip.js": "2.23.0",
"ai": "catalog:",
"bun-pty": "0.4.10",
"decimal.js": "10.5.0",
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12 changes: 5 additions & 7 deletions backend/cli/src/science/bionemo/download.ts
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
import { Uint8ArrayReader, ZipReader, type Entry } from "@zip.js/zip.js"
import { Uint8ArrayReader, ZipReader, type Entry, type FileEntry } from "@zip.js/zip.js"
import { Network } from "@/settings/network"

const LIMIT = 25 * 1024 * 1024
Expand Down Expand Up @@ -99,12 +99,10 @@ export async function decodeBioNemoResult(bytes: Uint8Array, limit = LIMIT) {
throw new Error(`NVIDIA result ZIP exceeds the ${limit}-byte capture limit`)
entries.push(entry)
}
const payloads = entries.filter((entry) => !entry.directory && entry.filename.endsWith(".response"))
const candidates = payloads.length
? payloads
: entries.filter((entry) => !entry.directory && entry.filename.endsWith(".json"))
if (candidates.length !== 1 || !candidates[0].getData)
throw new Error("NVIDIA result ZIP must contain one JSON response payload")
const files = entries.filter((entry): entry is FileEntry => !entry.directory)
const payloads = files.filter((entry) => entry.filename.endsWith(".response"))
const candidates = payloads.length ? payloads : files.filter((entry) => entry.filename.endsWith(".json"))
if (candidates.length !== 1) throw new Error("NVIDIA result ZIP must contain one JSON response payload")
const chunks: Uint8Array[] = []
let size = 0
await candidates[0].getData(
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4 changes: 2 additions & 2 deletions bun.lock
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