Parallel bgzip cram - #13

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daheise wants to merge 9 commits into

statgen:masterfrom

daheise:parallel-bgzip-cram

Commits on Sep 27, 2018

Add dependencies to htslib and libbam. Use my fork of libStatGen for development.
David Heise
committed
cc0a100

Commits on Oct 1, 2018

Use CPUs argument to set number of threads for parallel IO.
David Heise
committed
974c05e

Commits on Oct 4, 2018

Fix a threadbomb and multithread final write.
David Heise
committed
318c6d9

Commits on Oct 10, 2018

Changes to support libStatGen with cram support
David Heise
committed
8dd2b4f
Trying more parallelization.
David Heise
committed
737fcc0
Fix a dependency and debug line left behind.
David Heise
committed
d624475

Commits on Oct 11, 2018

Change cget requirement to github code.
David Heise
committed
520076e

Commits on Nov 30, 2020

Merge branch 'master' of github.com:statgen/Minimac4 into parallel-bgzip-cram
daheise
committed
3c97961

Commits on Sep 21, 2021

Merge branch 'master' of github.com:statgen/Minimac4 into parallel-bgzip-cram
daheise
committed
008c959