Predation diffusion and external diffusion - #335

Merged

gustavdelius merged 18 commits into

May 4, 2026

Commits on Apr 11, 2026

Rename `@diffusion` to `@ext_diffusion`
gustavdelius
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faa066c
Add "Predation Diffusion" vignette
gustavdelius
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0709516

Commits on Apr 12, 2026

Remove the reproduction from the diffusion
gustavdelius
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785feef
Add /upgrade-mizer-data skill and update AGENTS.md

gustavdelius
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claude
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18d262b
Add diffusion.R to Collate and document requirement in AGENTS.md

gustavdelius
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claude
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95b153a
Add `mizerDiffusion` to the rates functions used by `project`. Not yet tested.
gustavdelius
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777e083
Rename `setDiffusion()` to `setExtDiffusion()`.
gustavdelius
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7fe34cf
Added `use_predation_diffusion` slot.
gustavdelius
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f59115f
Delete snapshot files that should not have been committed
gustavdelius
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9bb5a3a
Fixed the calculation in `mizerDiffusion()` and tested it against analytic results
gustavdelius
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94965bb
Adding `D_ext` species parameter with the coefficient of external diffusion power law
gustavdelius
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f84d432
Adding `setExtDiffusion` to `setParams`
gustavdelius
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6344120
More tests of diffusion functionality
gustavdelius
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b4974cb

Commits on Apr 13, 2026

Merge master
gustavdelius
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08a09f1

Commits on May 4, 2026