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view -e EXPR diverges from bcftools when EXPR is pure sample-scope (FMT/...)

Status: Open.

Bug

#341 In sgkit-dev/vcztools;

· jeromekelleher opened on May 6, 2026

AttributeError: 'slice' object has no attribute 'size'

Status: Open.

Bug

#334 In sgkit-dev/vcztools;

· tomwhite opened on May 6, 2026

BedEncoder.__init__ calls _pre_walk() which is too slow

Status: Open.

#333 In sgkit-dev/vcztools;

· jeromekelleher opened on May 5, 2026

Performance on call_ field filtering is poor

Status: Open.

#321 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 28, 2026

Add --storage-option key=value to CLI

Status: Open.

#319 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 27, 2026

Add obstore to test suite

Status: Open.

#317 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 24, 2026

·  

0.2.0

Add icechunk and obstore as optional deps

Status: Open.

#316 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 24, 2026

·  

0.2.0

query --list-samples includes null sample IDs

bugSomething isn't workingSomething isn't working

Status: Open.

#311 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 23, 2026

Test warnings

Status: Open.

#302 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 21, 2026

bare flag identifier as the whole predicate

Status: Open.

Bug

#300 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 20, 2026

Initial VczReader API

Status: Open.

#291 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 17, 2026

·  

0.2.0

Complement-targeted regions fail on Windows + Python 3.11 (pyranges/sorted_nearest dtype bug)

Status: Open.

#290 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 17, 2026