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fix(bam): count unplaced reads once and handle empty CRAM sweeps - #177

Draft

NicoDeVeaux wants to merge 6 commits into

noodles-migration-redofrom

ndv/fix-pr118-unmapped-sweep

Draft

fix(bam): count unplaced reads once and handle empty CRAM sweeps#177
NicoDeVeaux wants to merge 6 commits into
noodles-migration-redofrom
ndv/fix-pr118-unmapped-sweep

Commits on Oct 23, 2026
- test(bam): pin the unmapped sweep to records with no reference
  
  NicoDeVeaux
  and
  claude
  committed
  14a3f05
- fix(bam): unmapped sweep returns only records with no reference
  
  NicoDeVeaux
  and
  claude
  committed
  036b417
Commits on Nov 1, 2026
- fix(bam): handle CRAM sweeps with no unplaced reads
  NicoDeVeaux
  committed
  2f813ef
- chore(lint): iterate corresponding count arrays
  NicoDeVeaux
  committed
  fdcc756
- chore(bam): propagate exhausted chunks with question mark
  NicoDeVeaux
  committed
  74a31ff
- fix(deps): update crossbeam-epoch security patch
  NicoDeVeaux
  committed
  f45947d