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fix(counting): distinguish chromosome mismatch from unassigned reads - #176

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NicoDeVeaux wants to merge 5 commits into

mainfrom

ndv/fix-no-genic-reads-diagnostic

Draft

fix(counting): distinguish chromosome mismatch from unassigned reads#176
NicoDeVeaux wants to merge 5 commits into
mainfrom
ndv/fix-no-genic-reads-diagnostic

Commits on Oct 23, 2026
- test(counting): pin the no-genic-reads diagnostic against shared chromosome names
  
  NicoDeVeaux
  and
  claude
  committed
  9e170ca
- fix(counting): claim a chromosome name mismatch only when names don't overlap
  
  NicoDeVeaux
  and
  claude
  committed
  ab3d75f
Commits on Nov 1, 2026
- fix(rna): describe configured gene assignment failures
  NicoDeVeaux
  committed
  d329f68
- chore(lint): iterate corresponding count arrays
  NicoDeVeaux
  committed
  7b58309
- fix(deps): retain verified security lock pins
  NicoDeVeaux
  committed
  7c5985a