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Read loops: one shared per-read output and writer stage #366

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Read loops: one shared per-read output and writer stage #366

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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -60,6 +60,10 @@ Sections commonly used: Features, Bug fixes, Other changes.
`SortedBamWriter::create_stdout`), so `--outStd SAM` gets the file writer's
`[SAM-MISMATCH]` check. Output is unchanged.

- The four read loops (single-end, paired-end, STARsolo, STARsolo paired) share
their per-read output rules, statistics, pair records, decoder thread and solo
consumer; single-end and paired-end share one writer stage. Output is unchanged.

- Third-party notices completed. `LICENSES/` gains the licences of code
ported from DegNorm (MIT) and David Elworthy's `sgt.h` via STAR (BSD
2-clause), and of libc++ (Apache 2.0 with LLVM Exceptions), whose random
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