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Bump phonopy from 4.0.1 to 4.1.0#502

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dependabot/pip/phonopy-4.1.0
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Bump phonopy from 4.0.1 to 4.1.0#502
dependabot[bot] wants to merge 5 commits into
mainfrom
dependabot/pip/phonopy-4.1.0

Update plotly version to 6.8.0 in environment.yml

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