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Wrong mutation ages after running merge_ARG.py

Status: Open.

#50 In popgenmethods/SINGER;

· pierrefaux opened on Jul 9, 2026

VCF parser treats non-"1" coding as "0"

Status: Open.

#46 In popgenmethods/SINGER;

· nspope opened on May 25, 2026

Possible typo in singer_master in v0.1.9

Status: Open.

#43 In popgenmethods/SINGER;

· Jesson-mark opened on Apr 21, 2026

compute_trace.py confuses -prefix and Ne?

Status: Open.

#42 In popgenmethods/SINGER;

· ShuzheGuan opened on Apr 2, 2026

Different allele counts for vcf and tree file.

Status: Open.

#41 In popgenmethods/SINGER;

· jodyhey opened on Feb 3, 2026

Incomplete parallel run due to "auto-debug" failed

Status: Open.

#40 In popgenmethods/SINGER;

· rpianezza opened on Feb 3, 2026

issues converting parallel_singer output to tskit trees

Status: Open.

#39 In popgenmethods/SINGER;

· h-pawar opened on Jan 20, 2026

Unexpected trend in diversity_fit_mse convergence plot

Status: Open.

#38 In popgenmethods/SINGER;

· zhangming-m opened on Jan 4, 2026

SINGER isn't coping with .vcf.gz file

Status: Open.

#34 In popgenmethods/SINGER;

· moshejasper opened on May 14, 2025

What about the ancestral stat?

Status: Open.

#33 In popgenmethods/SINGER;

· jiangzy26 opened on Apr 19, 2025

No output from compute_trace.py

Status: Open.

#31 In popgenmethods/SINGER;

· EEPuckett opened on Feb 7, 2025

Differentiating between mono-allelic sites vs missing sites

Status: Open.

#29 In popgenmethods/SINGER;

· skhalid7 opened on Jan 9, 2025