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- External tool phases (ktlint, linters) walk the tree themselves and reported files in excluded paths, e.g. copies of the code in nested git worktrees. Drop entries matching the default, configured or language exclusions, using the same path normalization as make_issue. - The stale-exclude audit flagged excluded directories that git ignores (.idea, tool state, local test data, nested worktrees). Those are not project code, so excluding them is never stale; skip them via `git check-ignore -z` (NUL-separated, since text mode sends "\r\n" on Windows). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Problem
.claude/worktrees, which duplicated every lint finding..idea, tool state, local test data, nested worktrees). Those aren't project code, so excluding them is never stale.Fix
make_tool_phasedrops entries matching the default, configured or language exclusions, normalizing paths exactly asmake_issuedoes.audit_excluded_dirsskips directories thatgit check-ignorereports. The newgit_ignored_pathshelper uses--stdin -z, because text mode sends\r\non Windows and git then looks uppath\r.Tested: new tests pass; the full suite on Windows has the same 32 failures as
main(path/CRLF issues unrelated to this change). Verified against a real Android app (Kotlin, 113 production files).🤖 Generated with Claude Code