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Update app to show neuroml #9

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Merged
pgleeson merged 1 commit into from
Nov 13, 2026
Merged

Update app to show neuroml #9

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48 changes: 35 additions & 13 deletions app.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,21 +6,30 @@
import pyvista as pv
import sys

version = "v0.1.0"
version = "v0.1.2"

st_mode = "-gui" not in sys.argv

print("Starting OpenWorm 3D Viewer (%s)" % version)

def print_(msg, print_it=True): # print_it=False when not verbose
if print_it:
pre = "Worm3DViewer >>> "
print("%s %s" % (pre, msg.replace("\n", "\n" + pre)))


print_("Starting OpenWorm 3D Viewer (%s)" % version)

if st_mode:
import streamlit as st

print_("Streamlit mode detected...")

st.set_page_config(layout="wide")

from stpyvista.utils import start_xvfb

if "IS_XVFB_RUNNING" not in st.session_state:
print("Starting XVFB...")
print_("Starting XVFB...")
start_xvfb()
st.session_state.IS_XVFB_RUNNING = True

Expand All @@ -38,34 +47,47 @@

plotter = pv.Plotter()

adding_sibernetic_model = False
adding_neuroml_model = True
adding_virtualworm_muscles = True
adding_virtualworm_neurons = False

spacing = 50
"""
add_sibernetic_model(
plotter, swap_y_z=True, offset3d=(spacing, -50, -100), show_footprint=False
)

add_neuroml_model(

if adding_sibernetic_model:
print_("Adding Sibernetic model...")
add_sibernetic_model(
plotter, swap_y_z=True, offset3d=(spacing, -50, -100), show_footprint=False
)

if adding_neuroml_model:
print_("Adding NeuroML model...")
add_neuroml_model(
plotter,
"NeuroML2/c302_D_Full.net.nml",
somas_only=False,
factor=0.2,
rotate_x=-90,
) # at 0...
"""

add_virtualworm_muscles(plotter, translate=(-1 * spacing, 0, 0))
# add_virtualworm_neurons(plotter, translate=(-1.8*spacing, 0, 0))
if adding_virtualworm_muscles:
print_("Adding VirtualWorm muscles...")
add_virtualworm_muscles(plotter, translate=(-1 * spacing, 0, 0))

if adding_virtualworm_neurons:
print_("Adding VirtualWorm neurons...")
add_virtualworm_neurons(plotter, translate=(-1.8 * spacing, 0, 0))

plotter.set_viewup([0, 10, 0])


print("Created the scene...")
print_("Created the scene...")

if st_mode:
##
if True:
print("Pass a key to avoid re-rendering at each page change")
print_("Pass a key to avoid re-rendering at each page change")
from stpyvista import stpyvista

stpyvista(plotter, key="pv_cube")
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