Add HRA palatine-tonsil NTR template (7 new terms)

bulk_ntr_workflow/outputs/hra-palatine-tonsil-reports/candidates.tsv

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+label	as_iri	uberon_id	note

bulk_ntr_workflow/outputs/hra-palatine-tonsil-reports/errors.tsv

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+label	as_iri	issue_type	parent_id	parent_label	detail
+tonsil germinal center mantle zone	https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-mantle-zone	asctb_temp_parent	https://purl.org/ccf/ASCTB-TEMP_tonsil-secondary-follicle	tonsil secondary follicle	Parent not yet in UBERON; subagent should search OLS4 for correct parent
+tonsil secondary follicle	https://purl.org/ccf/ASCTB-TEMP_tonsil-secondary-follicle	asctb_temp_parent	https://purl.org/ccf/ASCTB-TEMP_tonsil-follicle	tonsil follicle	Parent not yet in UBERON; subagent should search OLS4 for correct parent
+tonsil T cell zone	https://purl.org/ccf/ASCTB-TEMP_tonsil-t-cell-zone	fma_parent	FMA:55221	Diffuse lymphoid tissue	Subagent should resolve FMA→UBERON via OLS4

bulk_ntr_workflow/outputs/hra-palatine-tonsil-reports/input.tsv

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+table	as_iri	label	uberon_id	parent_id	parent_label	references	term_type
+	https://purl.org/ccf/ASCTB-TEMP_peritonsillar-plexus-of-veins	peritonsillar plexus of veins		UBERON:0001981	blood vessel		leaf
+	https://purl.org/ccf/ASCTB-TEMP_tonsil-follicle	tonsil follicle		UBERON:0002373	palatine tonsil		leaf
+	https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-dark-zone	tonsil germinal center dark zone		UBERON:0013688	tonsil germinal center		leaf
+	https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-light-zone	tonsil germinal center light zone		UBERON:0013688	tonsil germinal center		leaf
+	https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-mantle-zone	tonsil germinal center mantle zone		https://purl.org/ccf/ASCTB-TEMP_tonsil-secondary-follicle	tonsil secondary follicle		leaf
+	https://purl.org/ccf/ASCTB-TEMP_tonsil-secondary-follicle	tonsil secondary follicle		https://purl.org/ccf/ASCTB-TEMP_tonsil-follicle	tonsil follicle	https://doi.org/10.1101/2022.06.24.497299, https://doi.org/10.1126/sciimmunol.abh3768	leaf
+	https://purl.org/ccf/ASCTB-TEMP_tonsil-t-cell-zone	tonsil T cell zone		http://purl.org/sig/ont/fma/fma55221	Diffuse lymphoid tissue		leaf

bulk_ntr_workflow/source_data/palatine-tonsil.csv

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+tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_peritonsillar-plexus-of-veins,peritonsillar plexus of veins,,,UBERON:0001981,blood vessel,
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_tonsil-follicle,tonsil follicle,,,UBERON:0002373,palatine tonsil,
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-dark-zone,tonsil germinal center dark zone,,,UBERON:0013688,tonsil germinal center,
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-light-zone,tonsil germinal center light zone,,,UBERON:0013688,tonsil germinal center,
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_tonsil-germinal-center-mantle-zone,tonsil germinal center mantle zone,,,https://purl.org/ccf/ASCTB-TEMP_tonsil-secondary-follicle,tonsil secondary follicle,
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_tonsil-secondary-follicle,tonsil secondary follicle,,,https://purl.org/ccf/ASCTB-TEMP_tonsil-follicle,tonsil follicle,"https://doi.org/10.1101/2022.06.24.497299, https://doi.org/10.1126/sciimmunol.abh3768"
+palatine-tonsil,https://purl.org/ccf/ASCTB-TEMP_tonsil-t-cell-zone,tonsil T cell zone,,,http://purl.org/sig/ont/fma/fma55221,Diffuse lymphoid tissue,

src/ontology/uberon-edit.obo

@@ -225757,6 +225757,98 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
 property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
 property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3717" xsd:anyURI
 
+[Term]
+id: UBERON:8930153
+name: peritonsillar plexus of veins
+def: "A venous plexus located in the peritonsillar region surrounding the palatine tonsil, which drains blood from the tonsillar region and communicates with the pharyngeal veins and lingual vein, ultimately draining into the internal jugular vein." [PMID:34430822]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_peritonsillar-plexus-of-veins
+is_a: UBERON:0001593 ! venous plexus
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: located_in UBERON:0035228 ! tonsillar fossa
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
+[Term]
+id: UBERON:8930154
+name: palatine tonsil follicle
+def: "A lymphoid follicle that is part of a palatine tonsil." [PMID:11789984, PMID:417886]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_tonsil-follicle
+intersection_of: UBERON:0000444 ! lymphoid follicle
+intersection_of: part_of UBERON:0002373 ! palatine tonsil
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
+[Term]
+id: UBERON:8930155
+name: tonsil germinal center dark zone
+def: "Tonsil germinal centers contain two distinct microenvironments: the light zone and the dark zone. The dark zone is densely populated with B cell blasts (centroblasts) and reticular cells, where somatic hypermutation and clonal expansion occur." [PMID:25656706, PMID:8011279]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_tonsil-germinal-center-dark-zone
+is_a: UBERON:0001744 ! lymphoid tissue
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: part_of UBERON:0013688 ! tonsil germinal center
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
+[Term]
+id: UBERON:8930156
+name: tonsil germinal center light zone
+def: "Tonsil germinal centers contain two distinct microenvironments: the light zone and the dark zone. The light zone is sparsely populated with B cells (centrocytes) and includes additional cell types such as follicular dendritic cells, tingible body macrophages, and T follicular helper cells, where B cell selection takes place." [PMID:25656706, PMID:8011279]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_tonsil-germinal-center-light-zone
+is_a: UBERON:0001744 ! lymphoid tissue
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: part_of UBERON:0013688 ! tonsil germinal center
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
+[Term]
+id: UBERON:8930157
+name: tonsil germinal center mantle zone
+def: "A part of the secondary follicle of the tonsil in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these cells are displaced by the expanding germinal center and form a 'mantle' around it." [PMID:25656706]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_tonsil-germinal-center-mantle-zone
+intersection_of: UBERON:0010755 ! secondary follicle corona
+intersection_of: part_of UBERON:8930158 ! tonsil secondary follicle
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+relationship: surrounds UBERON:0013688 ! tonsil germinal center
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
+[Term]
+id: UBERON:8930158
+name: tonsil secondary follicle
+def: "A secondary follicle that is located in a tonsil." [DOI:10.1101/2022.06.24.497299, DOI:10.1126/sciimmunol.abh3768, PMID:28844822]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_tonsil-secondary-follicle
+intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue
+intersection_of: part_of UBERON:0002372 ! tonsil
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
+[Term]
+id: UBERON:8930159
+name: tonsil T cell zone
+def: "A T cell domain that is part of a tonsil, comprising the extrafollicular and paracortical regions where T lymphocytes interact with dendritic cells to initiate and regulate adaptive immune responses." [PMID:30801022]
+subset: added_by_HRA
+xref: CCF:ASCTB-TEMP_tonsil-t-cell-zone
+intersection_of: UBERON:0010393 ! T cell domain
+intersection_of: part_of UBERON:0002372 ! tonsil
+relationship: dc-contributor https://orcid.org/0000-0002-2999-0103
+relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens
+property_value: dcterms-date "2026-05-26T00:00:00Z" xsd:dateTime
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/pull/3719" xsd:anyURI
+
 [Typedef]
 id: aboral_to
 name: aboral to