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For a quick start, also check out the RealTrace tutorial notebook.
The wiki page contains the following sections:
- Usage Overview describes the general usage of RealTrace.
- Installation describes the installation of RealTrace.
- Likelihood Maximization describes the option to run the parameter optimization. The following calculations are typically run together with this option.
- Prediction describes the option to run the calculation of the posterior distributions.
- Sample Trajectories describes the option for sampling trajectories from the full posterior distribution.
- Joint Posteriors and Correlation Functions describes the option to calculate two-time-point joint posteriors, which can be used to calculate correlation functions.
- Using Segments describes the option to analyze data that includes changing conditions and therefore warrants separate sets of parameters.
- Versions and Error Messages explains possible error messages and describes the changes of different versions.