Add image QC and transcript QC subworkflow - #205

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an-altosian wants to merge 14 commits into

nf-core:devfrom

an-altosian:feat/qc-subworkflow-port

Commits on Aug 7, 2026

chore: untrack .vscode and add it to .gitignore
an-altosian
committed
92d91ba
chore: fix pre-existing mypy type errors in bin/ scripts
an-altosian
committed
787a972
feat: add image QC and transcript QC subworkflow

committed
0b8611c
feat(qc): add Dockerfiles to build the QC containers from environment.yml

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4c1361d
fix(qc): address review feedback on PR #205

committed
07ddfd1
fix(qc): re-port image QC from current upstream (nf-xenium-processing dev d71e0cd)

committed
f1dd859
fix(qc): add procps-ng to QC containers and fix contributors manifest

committed
53a37ce
refactor(qc): replace local quarto module with nf-core quartonotebook

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63a3dd2
fix(qc): make image_qc.py self-contained and add GL ES runtime to its container

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79634f1
fix: use Image.Resampling.NEAREST in utility_upscale_mask
an-altosian
committed
a653feb
fix(qc): size QC report processes for the rendered report, not the input

committed
5db171f

Commits on Aug 8, 2026