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- Status: Open.#790 In ncsa/eidolon;
Apply a substitution matrix per read-position bin, with the bin count chosen from data
enhancementNew feature or requestNew feature or requestStatus: Open.#784 In ncsa/eidolon;A heterozygous variant's allele is drawn per read, so a fragment's two mates can carry different alleles
bugSomething isn't workingSomething isn't workingStatus: Open.#780 In ncsa/eidolon;Fit the substitution matrix from mate-overlap disagreements, not reference mismatches
awaiting-release-validationMerged to develop, locally vetted; no action until release validation (#607)Merged to develop, locally vetted; no action until release validation (#607)enhancementNew feature or requestNew feature or requestStatus: Open.#779 In ncsa/eidolon;SV junction R2 reads draw substitution errors in read orientation, every other R2 in reference orientation
awaiting-release-validationMerged to develop, locally vetted; no action until release validation (#607)Merged to develop, locally vetted; no action until release validation (#607)bugSomething isn't workingSomething isn't workingStatus: Open.#777 In ncsa/eidolon;Model within-GC-bin coverage spread, not just the per-bin weight
enhancementNew feature or requestNew feature or requestStatus: Open.#775 In ncsa/eidolon;gen-mut-model's context weights depend on whether the reference is soft-masked
awaiting-release-validationMerged to develop, locally vetted; no action until release validation (#607)Merged to develop, locally vetted; no action until release validation (#607)bugSomething isn't workingSomething isn't workingStatus: Open.#771 In ncsa/eidolon;BedRecord::contains is given 1-based VCF POS against 0-based BED intervals (four callers)
awaiting-release-validationMerged to develop, locally vetted; no action until release validation (#607)Merged to develop, locally vetted; no action until release validation (#607)bugSomething isn't workingSomething isn't workingStatus: Open.#770 In ncsa/eidolon;Two unreproduced paths to a zero-weight distribution in gen-seq-error-model
bugSomething isn't workingSomething isn't workingStatus: Open.#767 In ncsa/eidolon;gen-mut-model discards observed indel lengths when a VCF has only insertions or only deletions
bugSomething isn't workingSomething isn't workingStatus: Open.#766 In ncsa/eidolon;- Status: Open.#761 In ncsa/eidolon;
An empty row in a fitted SNP model sends every mutation to A (trinuc model; reaches generated reads)
Status: Open.#760 In ncsa/eidolon;