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Chore: Drop sparql-client fork pin (de-fork, goo#194) - #311

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mdorf merged 1 commit into
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chore/drop-sparql-client-fork-pin
Jul 28, 2026
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Chore: Drop sparql-client fork pin (de-fork, goo#194)#311
mdorf merged 1 commit into
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chore/drop-sparql-client-fork-pin

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@mdorf

@mdorf mdorf commented Jul 28, 2026

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Summary

Part of the sparql-client de-fork (ncbo/goo#194). goo now depends on vanilla
sparql-client 3.2.2 from rubygems and re-homes all NCBO behavior (Redis read-through
cache, union-with-bind DSL, backend quirks) as goo-owned bolt-ons.

This PR drops this repo's own Gemfile pin of the NCBO fork
(gem 'sparql-client', github: 'ncbo/sparql-client', branch: 'development') and refreshes
Gemfile.lock:

  • goo re-pinned to the current development SHA (includes the de-fork).
  • sparql-client now resolves to 3.2.2 from rubygems via goo's gemspec pin (the GIT source
    entry is gone).

Dropping the pin is required, not optional: with the fork pin left in place bundler keeps
sourcing sparql-client from the fork, whose baked-in caching would stack with goo's new
bolt-ons.

No code changes. Runtime behavior is unchanged: caching still keys off Goo.use_cache
(set in this repo's environment configs), and the cache key/format is preserved verbatim,
so existing Redis cache entries stay valid.

Part of the coordinated wave across ontologies_linked_data, ncbo_annotator, ncbo_cron,
ncbo_ontology_recommender, ontologies_api (merged in dependency order).

Part of the sparql-client de-fork (ncbo/goo#194). goo now re-homes all
NCBO sparql-client behavior and its gemspec pins sparql-client = 3.2.2
from rubygems, so this repo's fork pin is obsolete and must go: leaving
it would keep sourcing the fork, whose baked-in caching would stack
with goo's bolt-ons.

Lock: goo -> 78ff860 (de-fork merge), sparql-client 3.2.2 (rubygems),
fork GIT source removed.
@codecov

codecov Bot commented Jul 28, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 82.03%. Comparing base (6409971) to head (1964854).

Additional details and impacted files
@@           Coverage Diff            @@
##           develop     #311   +/-   ##
========================================
  Coverage    82.03%   82.03%           
========================================
  Files          101      101           
  Lines         6853     6853           
========================================
  Hits          5622     5622           
  Misses        1231     1231           
Flag Coverage Δ
ag 81.96% <ø> (+0.01%) ⬆️
fs 81.96% <ø> (+0.01%) ⬆️
gd 81.97% <ø> (+0.08%) ⬆️
unittests 82.03% <ø> (ø)
vo 81.94% <ø> (+0.07%) ⬆️

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@mdorf
mdorf merged commit 29e9fa7 into develop Jul 28, 2026
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@mdorf mdorf changed the title Drop sparql-client fork pin (de-fork, goo#194) Chore: Drop sparql-client fork pin (de-fork, goo#194) Jul 28, 2026
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