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@mpieva

MPI EVA Bioinformatics

Computational Ancient Genomics research group and Ancient DNA Core Unit, Max Planck Institute for Evolutionary Anthropology

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  1. mapAD mapAD Public

    An aDNA aware short-read mapper

    Rust 22

  2. mapping-iterative-assembler mapping-iterative-assembler Public

    Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

    C 19 7

  3. quicksand quicksand Public

    A pipeline for the analysis of sedimentary ancient mtDNA.

    Nextflow 15 3

  4. biohazard-tools biohazard-tools Public

    Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

    Haskell 7 1

  5. network-aware-bwa network-aware-bwa Public

    the Burrows Wheeler Aligner with networking capabilities

    C 6 4

  6. matchseq matchseq Public

    Perl scripts for reconstructing the structure of double-stranded DNA fragments from single-stranded DNA libraries

    Perl 2 1

Repositories

Showing 10 of 29 repositories
  • postprocessing Public

    Basic post-processing for human shotgun and nuclear capture libraries

    mpieva/postprocessing’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 1, 2026
  • NED-flow Public Forked from Kevinnota/NED-flow
    mpieva/NED-flow’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 1, 2026
  • mapAD Public

    An aDNA aware short-read mapper

    mpieva/mapAD’s past year of commit activity
    Rust 22 MIT 0 0 0 Updated Mar 6, 2026
  • quicksand Public

    A pipeline for the analysis of sedimentary ancient mtDNA.

    mpieva/quicksand’s past year of commit activity
    Nextflow 15 MIT 3 4 0 Updated Feb 9, 2026
  • quicksand-build Public

    The mpieva/quicksand helper pipeline

    mpieva/quicksand-build’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Sep 17, 2025
  • network-aware-bwa Public

    the Burrows Wheeler Aligner with networking capabilities

    mpieva/network-aware-bwa’s past year of commit activity
    C 6 GPL-3.0 4 0 2 Updated Jun 8, 2022
  • biohazard Public

    Udo Stenzel's biohazard — a Haskell library for bioinformatics [MIRROR]

    mpieva/biohazard’s past year of commit activity
    Haskell 0 BSD-3-Clause 0 0 0 Updated Apr 5, 2022
  • index_swapping Public

    Perl script for identifying cross-contamination events that occurred between double-index libraries due to index swapping during library amplification or sequencing.

    mpieva/index_swapping’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Nov 5, 2021
  • biohazard-tools Public

    Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

    mpieva/biohazard-tools’s past year of commit activity
    Haskell 7 BSD-3-Clause 1 0 0 Updated Mar 18, 2021
  • nuclear_sediment_pipeline Public

    Scripts used within the sediment capture pipeline

    mpieva/nuclear_sediment_pipeline’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 26, 2021
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