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National Microbiome Data Collaborative

National Microbiome Data Collaborative

65 followers
https://microbiomedata.org/
support@microbiomedata.org

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nmdc-schema nmdc-schema Public

National Microbiome Data Collaborative (NMDC) unified data model

Python 46 10
docs docs Public

User-facing, web-based documentation about the NMDC

Dockerfile 3 5

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Showing 10 of 84 repositories

metaMAGs Public
Workflow for metagenome assembled genomes generation.

microbiomedata/metaMAGs’s past year of commit activity

Python 8 6 3 1 Updated May 5, 2026
nmdc-server Public
Data portal client and server for NMDC.

microbiomedata/nmdc-server’s past year of commit activity

Python 12 1 111 7 Updated May 5, 2026
nmdc_api_utilities Public
A python client for interacting with the NMDC (National Microbiome Data Collaborative) runtime API.

microbiomedata/nmdc_api_utilities’s past year of commit activity

Python 6 1 11 2 Updated May 4, 2026
submission-schema Public
The NMDC submission schema

microbiomedata/submission-schema’s past year of commit activity

Python 1 MIT 4 22 1 Updated May 4, 2026
nmdc_automation Public
Prototype automation

microbiomedata/nmdc_automation’s past year of commit activity

Python 2 4 55 9 Updated May 4, 2026
nmdc-runtime Public
Runtime system for NMDC data management and orchestration

microbiomedata/nmdc-runtime’s past year of commit activity

Python 7 7 138 (3 issues need help) 12 Updated May 4, 2026
nmdc-lakehouse Public

microbiomedata/nmdc-lakehouse’s past year of commit activity

Jupyter Notebook 0 0 26 0 Updated May 4, 2026
nmdc-schema Public
National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata/nmdc-schema’s past year of commit activity

Python 46 CC0-1.0 10 425 (4 issues need help) 4 Updated May 4, 2026
nmdc-mass-spec-automation Public

microbiomedata/nmdc-mass-spec-automation’s past year of commit activity

Python 1 1 4 0 Updated May 4, 2026
nmdc-ai-eval Public
Framework and data for performing evaluations for AI-powered NMDC tools.

microbiomedata/nmdc-ai-eval’s past year of commit activity

Python 2 0 34 2 Updated May 4, 2026

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