Issues

• Move the synthetic data generators into dm-bip

  linkml/dm-bip#379 · Filter by author amc-corey-cox opened on Sep 24, 2026

• Update format of the provenance output

  linkml/dm-bip#378 · Filter by author gingin77 opened on Sep 22, 2026

• Numeric values stay strings: linkml-map does not coerce decimal ranges

  Pipeline Improvement
  linkml/dm-bip#377 · Filter by author amc-corey-cox opened on Sep 22, 2026

• Mapping requires a schema-automator-generated source schema; no way to supply a hand-authored one

  linkml/dm-bip#375 · Filter by author amc-corey-cox opened on Sep 16, 2026

• Mapped records have no id, so nothing validates against BDCHM

  Pipeline Improvement
  linkml/dm-bip#374 · Filter by author amc-corey-cox opened on Sep 11, 2026

• Document the QC grading methodology and how to read QC reports

  futureQuality Control
  linkml/dm-bip#372 · Filter by author amc-corey-cox opened on Aug 29, 2026

• Grade harmonized output against TOPMed DCC reference aggregates

  futureQuality Control
  linkml/dm-bip#371 · Filter by author amc-corey-cox opened on Aug 29, 2026

• Check that a published release has a matching deploy tag

  futureRelease Control
  linkml/dm-bip#369 · Filter by author amc-corey-cox opened on Aug 28, 2026

• Split the container image into a generic base and per-deployment images

  futureRelease Control
  linkml/dm-bip#368 · Filter by author amc-corey-cox opened on Aug 28, 2026

• Invoke pipeline helpers as modules, not repo-relative paths

  futurePipeline Improvement
  linkml/dm-bip#367 · Filter by author amc-corey-cox opened on Aug 28, 2026

• --profile is silently ignored in cohort mode

  BDC Applicationfuture
  linkml/dm-bip#365 · Filter by author amc-corey-cox opened on Aug 28, 2026

• Validate the app contract before submitting tasks

  BDC Applicationfuture
  linkml/dm-bip#362 · Filter by author amc-corey-cox opened on Aug 27, 2026

• Map step reports success when an entity fails and produces no output

  futurePipeline Improvement
  linkml/dm-bip#361 · Filter by author amc-corey-cox opened on Aug 27, 2026

• Test coverage for the cohort-mode shell scripts

  futureQuality Control
  linkml/dm-bip#360 · Filter by author amc-corey-cox opened on Aug 27, 2026

• Restore metadata-action for image tagging in the docker workflow

  futureRelease Control
  linkml/dm-bip#359 · Filter by author amc-corey-cox opened on Aug 27, 2026

• Consume prov-schema as a released package instead of a URL import

  futureRelease Control
  linkml/dm-bip#356 · Filter by author amc-corey-cox opened on Aug 19, 2026

• Add Dependabot

  futureRelease Control
  linkml/dm-bip#355 · Filter by author amc-corey-cox opened on Aug 19, 2026

• Create variable instances

  Audit Logsfuture
  linkml/dm-bip#354 · Filter by author gingin77 opened on Aug 13, 2026
  1

  

• Emit PROV-O provenance records during harmonization

  Audit Logs
  linkml/dm-bip#352 · Filter by author amc-corey-cox opened on Aug 7, 2026
  2

• ClassDerivation needs row-level condition filter to suppress null-key rows

  futurePipeline Improvement
  linkml/dm-bip#345 · Filter by author csiege opened on Jul 16, 2026
  1

  

• Fail map-data on fatal linkml-map exit codes in non-strict mode

  futurePipeline Improvement
  linkml/dm-bip#338 · Filter by author amc-corey-cox opened on Jul 9, 2026

• Set DuckDB memory limit per parallel map-data job

  futurePipeline Improvement
  linkml/dm-bip#336 · Filter by author amc-corey-cox opened on Jul 1, 2026

• Blank consent-group TSV files cause DuckDB BinderError when referenced in joins: blocks

  futurePipeline Improvement
  linkml/dm-bip#335 · Filter by author csiege opened on Jun 30, 2026
  2

  

• Generalize trans-spec authoring beyond MeasurementObservation

  Trans-Spec Authoring
  linkml/dm-bip#329 · Filter by author amc-corey-cox opened on Jun 5, 2026
  2

• Variable library — source-to-target mapping catalog

  Trans-Spec Authoring
  linkml/dm-bip#309 · Filter by author amc-corey-cox opened on Apr 9, 2026
  1