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HPCing
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HPCing
49 followers · 36 following

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@HCEMM

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iquasere/README.md

Hi there! 👋

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1646 commits        ██████░░░░░░░░░░░░░░░░░░░   23.10 % 
🌆 Daytime                3782 commits        █████████████░░░░░░░░░░░░   53.09 % 
🌃 Evening                1346 commits        █████░░░░░░░░░░░░░░░░░░░░   18.89 % 
🌙 Night                  350 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   04.91 %

📅 I'm Most Productive on Wednesday

Monday                   1284 commits        █████░░░░░░░░░░░░░░░░░░░░   18.02 % 
Tuesday                  1618 commits        ██████░░░░░░░░░░░░░░░░░░░   22.71 % 
Wednesday                1752 commits        ██████░░░░░░░░░░░░░░░░░░░   24.59 % 
Thursday                 1019 commits        ████░░░░░░░░░░░░░░░░░░░░░   14.30 % 
Friday                   968 commits         ███░░░░░░░░░░░░░░░░░░░░░░   13.59 % 
Saturday                 57 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.80 % 
Sunday                   426 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   05.98 %

📊 This Week I Spent My Time On

💬 Programming Languages: 
Markdown                 1 hr 21 mins        ███████████░░░░░░░░░░░░░░   45.86 % 
Other                    41 mins             ██████░░░░░░░░░░░░░░░░░░░   23.47 % 
YAML                     20 mins             ███░░░░░░░░░░░░░░░░░░░░░░   11.74 % 
Nextflow                 13 mins             ██░░░░░░░░░░░░░░░░░░░░░░░   07.58 % 
Docker                   9 mins              █░░░░░░░░░░░░░░░░░░░░░░░░   05.32 % 

🐱‍💻 Projects: 
acceleration-toolbox     1 hr 22 mins        ████████████░░░░░░░░░░░░░   46.09 % 
rnaseq-nextflow          1 hr 9 mins         ██████████░░░░░░░░░░░░░░░   38.75 % 
ansible-puli             17 mins             ██░░░░░░░░░░░░░░░░░░░░░░░   09.92 % 
Unknown Project          9 mins              █░░░░░░░░░░░░░░░░░░░░░░░░   05.24 %

I Mostly Code in Python

Python                   13 repos            ████████░░░░░░░░░░░░░░░░░   33.33 % 
HTML                     10 repos            ██████░░░░░░░░░░░░░░░░░░░   25.64 % 
Java                     4 repos             ███░░░░░░░░░░░░░░░░░░░░░░   10.26 % 
Shell                    2 repos             █░░░░░░░░░░░░░░░░░░░░░░░░   05.13 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.56 %

Last Updated on 06/07/2026 20:37:49 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 30 3

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 40 4

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 63 7

  4. MOSCA MOSCA Public

    Meta-Omics Software for Community Analysis

    Python 37 7

  5. annotation_paper annotation_paper Public

    UPIMAPI, reCOGnizer and KEGGCharter: bioinformatics tools for fast functional annotation and visualization of (meta)-omics datasets

    Python 4

  6. MOSGUITO MOSGUITO Public

    MOSca's GUI TO perform meta-omics analyses

    HTML 2 2