Update from biotools

CITATION.cff

@@ -1,76 +1,108 @@
-# YAML 1.2
----
-abstract: "Word2Vec based similarity measure of mass spectrometry data."
+abstract: Word2Vec based similarity measure of mass spectrometry data.
 authors:
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Huber
-    given-names: Florian
-    orcid: "https://orcid.org/0000-0002-3535-9406"
-  -
-    affiliation: "Wageningen University and Research"
-    family-names: Hooft
-    name-particle: van der
-    given-names: Justin J. J.
-    orcid: "https://orcid.org/0000-0002-9340-5511"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Spaaks
-    given-names: Jurriaan H.
-    orcid: "https://orcid.org/0000-0002-7064-4069"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Diblen
-    given-names: Faruk
-    orcid: "https://orcid.org/0000-0002-0989-929X"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Verhoeven
-    given-names: Stefan
-    orcid: "https://orcid.org/0000-0002-5821-2060"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Geng
-    given-names: Cunliang
-    orcid: "https://orcid.org/0000-0002-1409-8358"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Meijer
-    given-names: Christiaan
-    orcid: "https://orcid.org/0000-0002-5529-5761"
-  -
-    affiliation: "University of Glasgow"
-    family-names: Rogers
-    given-names: Simon
-    orcid: "https://orcid.org/0000-0003-3578-4477"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Belloum
-    given-names: Adam
-    orcid: "https://orcid.org/0000-0001-6306-6937"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: Spreeuw
-    given-names: Hanno
-    orcid: "https://orcid.org/0000-0002-5057-0322"
-  -
-    affiliation: "Netherlands eScience Center"
-    family-names: de Jonge
-    given-names: Niek
-    orcid: "https://orcid.org/0000-0002-3054-6210"
-  -
-    affiliation: "ICS, Masaryk University"
-    family-names: Skoryk
-    given-names: Maksym
-    orcid: "https://orcid.org/0000-0003-2056-8018"
-
+- affiliation: Netherlands eScience Center
+  family-names: Huber
+  given-names: Florian
+  orcid: https://orcid.org/0000-0002-3535-9406
+- affiliation: Wageningen University and Research
+  family-names: Hooft
+  name-particle: van der
+  given-names: Justin J. J.
+  orcid: https://orcid.org/0000-0002-9340-5511
+- affiliation: Netherlands eScience Center
+  family-names: Spaaks
+  given-names: Jurriaan H.
+  orcid: https://orcid.org/0000-0002-7064-4069
+- affiliation: Netherlands eScience Center
+  family-names: Diblen
+  given-names: Faruk
+  orcid: https://orcid.org/0000-0002-0989-929X
+- affiliation: Netherlands eScience Center
+  family-names: Verhoeven
+  given-names: Stefan
+  orcid: https://orcid.org/0000-0002-5821-2060
+- affiliation: Netherlands eScience Center
+  family-names: Geng
+  given-names: Cunliang
+  orcid: https://orcid.org/0000-0002-1409-8358
+- affiliation: Netherlands eScience Center
+  family-names: Meijer
+  given-names: Christiaan
+  orcid: https://orcid.org/0000-0002-5529-5761
+- affiliation: University of Glasgow
+  family-names: Rogers
+  given-names: Simon
+  orcid: https://orcid.org/0000-0003-3578-4477
+- affiliation: Netherlands eScience Center
+  family-names: Belloum
+  given-names: Adam
+  orcid: https://orcid.org/0000-0001-6306-6937
+- affiliation: Netherlands eScience Center
+  family-names: Spreeuw
+  given-names: Hanno
+  orcid: https://orcid.org/0000-0002-5057-0322
+- affiliation: Netherlands eScience Center
+  family-names: de Jonge
+  given-names: Niek
+  orcid: https://orcid.org/0000-0002-3054-6210
+- affiliation: ICS, Masaryk University
+  family-names: Skoryk
+  given-names: Maksym
+  orcid: https://orcid.org/0000-0003-2056-8018
 cff-version: 1.2.0
 keywords:
-  - Word2Vec
-  - "similarity measures"
-  - "mass spectrometry"
-license: "Apache-2.0"
-message: "If you use this software, please cite it using these metadata."
-repository-code: "https://github.com/iomega/spec2vec"
+- Word2Vec
+- similarity measures
+- mass spectrometry
+license: Apache-2.0
+message: If you use this software, please cite it and the Primary publications below.
+repository-code: https://github.com/iomega/spec2vec
 title: spec2vec
-...
+type: software
+repository: https://github.com/iomega/spec2vec
+identifiers:
+- type: other
+  value: spec2vec
+  description: bio.tools
+references:
+- doi: 10.1101/2020.08.11.245928
+  title: 'Spec2Vec: Improved mass spectral similarity scoring through learning of
+    structural relationships'
+  authors:
+  - first_name: Florian
+    last_name: Huber
+  - first_name: Lars
+    last_name: Ridder
+  - first_name: Stefan
+    last_name: Verhoeven
+  - first_name: Jurriaan
+    last_name: Spaaks
+  - first_name: Faruk
+    last_name: Diblen
+  - first_name: Simon
+    last_name: Rogers
+  - first_name: Justin J.J.
+    last_name: van der Hooft
+  year: 2020
+  pub_type: article
+preferred-citation:
+  doi: 10.1101/2020.08.11.245928
+  title: 'Spec2Vec: Improved mass spectral similarity scoring through learning of
+    structural relationships'
+  authors:
+  - first_name: Florian
+    last_name: Huber
+  - first_name: Lars
+    last_name: Ridder
+  - first_name: Stefan
+    last_name: Verhoeven
+  - first_name: Jurriaan
+    last_name: Spaaks
+  - first_name: Faruk
+    last_name: Diblen
+  - first_name: Simon
+    last_name: Rogers
+  - first_name: Justin J.J.
+    last_name: van der Hooft
+  year: 2020
+  pub_type: article