Shared Features

Here is the Shared Features page!

This page has information on:

(1) Freely available microarray resources (GEO, ArrayExpress, and R Statistical Programming)
(2) Normalization strategies and resources
(3) Experimental design and batch correction (including saving datasets frequently)
(4) Outlier removal strategies and methods
(5) Quality control methods
(6) Steps for handling confounding variables
(7) Probe annotation decisions
(8) Differential expression analysis for microarrays with the limma package for R
(9) Problem Solving (what do to when you get stuck)

In the future, some of these categories may move to a general 'Neurogenetics Common Themes' repository, a tutorial devoted to exploring and emphasizing strategies and methods shared by all Neurogenetic experiments