Explore dropping CDSs

[hexylena]

perhaps we should hide this behind a flag?

right now it's written to drop every CDS, but the code allows to ignore CDS where the CDS location == exon location

not sure what to do with this :(

[abretaud]

Woah, strange behavior in #60 indeed :/

Ok to merge something like this to fix things for most people, still need to see if we prefer the latest code suggestion in #60 (comment) (not much time to test it now :( )

[hexylena]

oof

urllib3.connectionpool: DEBUG: http://localhost:8888 "POST /organism/findAllOrganisms HTTP/1.1" 200 None
root: INFO: Processing Merlin with features: [SeqFeature(SimpleLocation(ExactPosition(1), ExactPosition(691), strand=1), type='repeat_region', id='Merlin_800', qualifiers=...)]
root: DEBUG: type repeat_region
root: ERROR: Failed to load features from Merlin
root: DEBUG: writing out: []
root: DEBUG: empty list, no more features to write
root: DEBUG: writing out: []

not sure what to do about that. also not sure if it's due to fcd4ff9 (#62) where we started passing the parameters properly.