fix: close sqlite3 staging connections before os.replace (Windows WinError 32)

src/codex_usage_tracker/kernel/application/jobs.py

@@ -88,6 +88,7 @@ def _read(
                 f"SELECT * FROM refresh_runs {clause}",
                 parameters,
             ).fetchone()
+        connection.close()
         return _snapshot(row, include_result=include_result) if row else None
 
 

src/codex_usage_tracker/kernel/content.py

@@ -359,6 +359,7 @@ def _initialize_content_database(path: Path) -> None:
             connection.execute(f"PRAGMA user_version = {CONTENT_SCHEMA_VERSION}")
             connection.execute("PRAGMA foreign_keys = ON")
             connection.executescript(_SCHEMA_SQL)
+        connection.close()
         staging.chmod(0o600)
         os.replace(staging, target)
         with sqlite3.connect(target) as connection:
@@ -424,6 +425,7 @@ def _source_targets(
                 "SELECT source_id, source_location FROM source_registry"
             )
         }
+    operational.close()
     return tuple(
         {
             **dict(row),

src/codex_usage_tracker/kernel/database.py

@@ -44,6 +44,7 @@ def initialize_analytical_database(
             connection.execute("PRAGMA foreign_keys = ON")
             connection.execute("PRAGMA journal_mode = DELETE")
             create_schema(connection)
+        connection.close()
         _owner_only(staging)
         failures = validate_analytical_database(staging)
         if failures:
@@ -185,6 +186,7 @@ def validate_analytical_database(path: Path) -> list[str]:
                 failures.append(f"analytical quick_check failed: {integrity}")
             if connection.execute("PRAGMA foreign_key_check").fetchone() is not None:
                 failures.append("analytical foreign-key check failed")
+        connection.close()
     except sqlite3.DatabaseError as exc:
         failures.append(f"analytical database is unreadable: {exc}")
     return failures
@@ -283,6 +285,7 @@ def analytical_schema_version(path: Path) -> int | None:
     try:
         with sqlite3.connect(f"{target.as_uri()}?mode=ro", uri=True) as connection:
             return int(connection.execute("PRAGMA user_version").fetchone()[0])
+        connection.close()
     except sqlite3.DatabaseError as exc:
         raise ValueError("analytical database schema header is unreadable") from exc
 

src/codex_usage_tracker/kernel/ingest.py

@@ -584,6 +584,7 @@ def _plans(
             registered = connection.execute(
                 "SELECT source_id, source_location FROM source_registry"
             ).fetchall()
+        connection.close()
         source_by_location = {
             str(location): str(source_id) for source_id, location in registered
         }
@@ -1058,6 +1059,7 @@ def _write_path(
         if index_backfill:
             with sqlite3.connect(staging) as connection:
                 create_missing_secondary_indexes(connection)
+            connection.close()
         return staging, True, incremental_rollup_safe
 
     def _active_collision_requires_isolation(
@@ -1245,6 +1247,7 @@ def _tool_turn_index_ready(path: Path) -> bool:
         )
 
 
+    connection.close()
 def _clone_checkpointed_database(source: Path, destination: Path) -> bool:
     """Use a filesystem snapshot only while the validated main file is stable."""
 
@@ -1255,6 +1258,7 @@ def _clone_checkpointed_database(source: Path, destination: Path) -> bool:
             checkpointed = not wal.exists() or wal.stat().st_size == 0
             cloned = checkpointed and _copy_on_write_clone(source, destination)
             guard.execute("ROLLBACK")
+        guard.close()
         if not cloned:
             destination.unlink(missing_ok=True)
             return False

src/codex_usage_tracker/kernel/operational.py

@@ -197,6 +197,7 @@ def initialize_operational_database(path: Path) -> Path:
             connection.execute(f"PRAGMA user_version = {OPERATIONAL_SCHEMA_VERSION}")
             connection.executescript(_OPERATIONAL_SQL)
             connection.execute("INSERT INTO cutover_control(singleton, state) VALUES (1, 'absent')")
+        connection.close()
         staging.chmod(0o600)
         _validate_operational(staging)
         os.replace(staging, target)
@@ -1281,6 +1282,7 @@ def _migrate_operational(path: Path) -> None:
         )
 
 
+    connection.close()
 def _control_from_row(row: sqlite3.Row) -> CutoverControl:
     return CutoverControl(
         state=CutoverState(row["state"]),