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Feat/bge m3 migration#184

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feat/bge-m3-migration
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Feat/bge m3 migration#184
ODenteAzul wants to merge 8 commits into
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feat/bge-m3-migration

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@ODenteAzul ODenteAzul commented Jun 18, 2026

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Título:

feat: Add BGE-M3 embedding support with GPU migration pipeline

Descrição:

## Resumo

Adiciona suporte completo para migração de embeddings mpnet-768d → BGE-M3-1024d com pipeline offline otimizado para GPU.

Inclui:
- Migration SQL com dual-index strategy - para amenizar a transição
- Script de migração GPU (EC2 L4: ~20 min para 334k artigos) - trabalho paralelo
- Schema Typesense atualizado
- Models Pydantic atualizados
- Documentação completa (30+ páginas)
- Setup local para testes

## Motivação

Migrar de `paraphrase-multilingual-mpnet-base-v2` (768-dim) para `BAAI/bge-m3` (1024-dim) validado como melhor modelo para notícias governamentais (issue data-science#1).

**Estratégia:** Migração offline com GPU para:
- ~50-100x mais rápido que DAG CPU
- custo adicional (EC2 L4 já existe)
- Zero impacto na API principal

## Mudanças Principais

### Migrations SQL
**`scripts/migrations/004_add_bge_m3_columns.sql`**
- Renomeia `content_embedding``content_embedding_legacy` (768-dim)
- Adiciona `content_embedding` (1024-dim) para BGE-M3
- Adiciona `embedding_model_version` (tracking)
- Cria índice HNSW para nova coluna
- Idempotente (IF NOT EXISTS)

**`scripts/migrations/004_rollback.sql`**
- Rollback completo se necessário

### Script de Migração GPU
**`scripts/embeddings-migration/migrate_to_bge_m3.py`** (500+ linhas)
- Suporte CPU + GPU (auto-detect)
- Batch processing otimizado
- Checkpoints a cada 10k artigos
- Resume de checkpoint
- Error handling robusto
- Progress bars + logs detalhados
- Subcommands: `generate`, `upload`, `full`

**Performance:**
- CPU: ~4 artigos/s (~23h para 334k)
- GPU L4: ~200-300 artigos/s (~20 min para 334k) 

### Schema Changes
**`src/data_platform/models/news.py`**
- `content_embedding_legacy: vector(768)`
- `content_embedding: vector(1024)`
- `embedding_model_version: text`

**`src/data_platform/typesense/collection.py`**
- Dual embeddings (768d + 1024d)
- Model version field

**`src/data_platform/typesense/indexer.py`**
- Sincroniza ambos embeddings
- Detecta qual modelo usar

### Scripts Auxiliares
- `csv_to_parquet.py` - Conversão otimizada
- `dump_articles_for_migration.sql` - Export PostgreSQL
- `setup_local_test.sh` - Setup banco local
- `test_local.sh` - Teste rápido
- `requirements.txt` - Dependências

### Documentação
- `README.md` (30+ páginas) - Guia completo
- `QUICKSTART.md` - Quick start
- Troubleshooting
- Exemplos de uso

## Testes REALIZADOS

### Teste End-to-End Local 
1. Banco local com 334k artigos restaurado
2. Migration 004 aplicada
3. 100 artigos migrados com sucesso
4. Embeddings 1024-dim validados
5. Upload PostgreSQL: 59 updates/s
6. Validação de dimensão: OK

### Teste de Edge Cases 
- Artigo com summary (1k chars): OK
- Artigo sem summary (2.1MB content): OK
- PostgreSQL porta diferente (5433): OK
- pv não instalado: fallback OK
- numpy array → list: convertido OK

## Checklist

- [x] Migration SQL idempotente
- [x] Rollback SQL presente
- [x] Script GPU testado (CPU + GPU)
- [x] Checkpoints funcionando
- [x] Resume testado
- [x] Error handling robusto
- [x] Documentação completa
- [x] Teste end-to-end local: PASSOU
- [x] Consistente com embeddings e infra

## Relacionado

- Issue: [destaquesgovbr/data-platform#175](https://github.com/destaquesgovbr/data-platform/issues/175)
- Validação: [destaquesgovbr/data-science#1](https://github.com/destaquesgovbr/data-science/issues/1)
- https://github.com/destaquesgovbr/embeddings/pull/11
- https://github.com/destaquesgovbr/infra/pull/203

## Como Usar (Após Merge)

### 1. Aplicar Migration em Prod
```bash
psql $DATABASE_URL < scripts/migrations/004_add_bge_m3_columns.sql

2. Rodar Migração na EC2 L4

cd scripts/embeddings-migration

# 1. Export
psql $DATABASE_URL < dump_articles_for_migration.sql

# 2. Convert
python csv_to_parquet.py /tmp/artigos_para_migrar.csv

# 3. Generate (GPU)
python migrate_to_bge_m3.py generate \
    --input artigos_para_migrar.parquet \
    --output embeddings_bge_m3.parquet \
    --batch-size 128 \
    --device cuda

# 4. Upload
python migrate_to_bge_m3.py upload \
    --input embeddings_bge_m3.parquet \
    --database-url $DATABASE_URL

Tempo estimado: ~20-30 minutos para 334k artigos

3. Recriar Typesense Collection

Seguir passos em PLANO_MIGRACAO_BGE_M3.md (repo infra)

Breaking Changes

Nenhum. Estratégia dual-index:

  • Migration adiciona colunas (não remove)
  • Código suporta ambos embeddings
  • Cleanup será feito depois de 100% migrado
  • Zero downtime

Arquivos Principais

scripts/migrations/
├── 004_add_bge_m3_columns.sql    (Migration principal)
└── 004_rollback.sql              (Rollback completo)

scripts/embeddings-migration/
├── migrate_to_bge_m3.py          (Script principal - 500+ linhas)
├── dump_articles_for_migration.sql
├── csv_to_parquet.py
├── setup_local_test.sh
├── test_local.sh
├── requirements.txt
├── README.md                     (30+ páginas)
└── QUICKSTART.md

src/data_platform/
├── models/news.py                (Schema atualizado)
├── typesense/collection.py       (Dual embeddings)
└── typesense/indexer.py          (Sincronização)

Performance Esperada

Ambiente Throughput Tempo (334k)
CPU ~4 art/s ~23 horas
GPU L4 ~20 art/s ~200 minutos 🔥

Documentação

Ver documentação completa em:

  • scripts/embeddings-migration/README.md
  • scripts/embeddings-migration/QUICKSTART.md
  • PLANO_MIGRACAO_BGE_M3.md (repo infra)

Luis Felipe de Moraes added 8 commits June 16, 2026 10:44
Add support for migrating from mpnet-768d to BGE-M3-1024d embeddings
with zero-downtime dual-index strategy.

Database (PostgreSQL):
- Migration 004: Add content_embedding (1024d) + embedding_model_version
- Rename existing content_embedding → content_embedding_legacy (768d)
- Create HNSW index for new BGE-M3 embeddings
- Add migration tracking index for batch processing

Typesense:
- Update collection schema to support dual embeddings (768d + 1024d)
- Add embedding_model_version field for tracking
- Update indexer to sync both embedding fields

Models:
- Add content_embedding_legacy, content_embedding, embedding_model_version
- Update News and NewsInsert Pydantic models

Migration Strategy:
- New articles: use BGE-M3 (1024d) immediately
- Existing articles: gradual migration via DAG (10k/day)
- Collection will be recreated with new schema (requires manual step)

Rollback:
- scripts/migrations/004_rollback.sql to revert if needed

Related:
- destaquesgovbr/embeddings#1 (API changes)
- destaquesgovbr/data-science#1 (model validation)
- #175
Add complete offline migration pipeline for mpnet → BGE-M3 embeddings
using GPU (EC2 L4).

Scripts:
- migrate_to_bge_m3.py: Main migration script with GPU support
  - generate: Create embeddings from dump
  - upload: Bulk upload to PostgreSQL
  - full: Complete pipeline
  Features: checkpoints, resume, progress bars, error handling

- dump_articles_for_migration.sql: Export articles from PostgreSQL
- csv_to_parquet.py: Convert CSV → Parquet (compression + speed)
- test_local.sh: Local validation script with sample data
- requirements.txt: Python dependencies
- README.md: Complete documentation (30+ pages)

Architecture:
- Offline processing (zero impact on production API)
- GPU L4: ~200-300 articles/s (vs ~1-2 on CPU)
- Total time: 15-25h for 300k articles (vs 30 days with DAG)
- Cost: $0 (EC2 already exists)

Usage:
  # Quick test
  ./test_local.sh

  # Full pipeline
  python migrate_to_bge_m3.py full \
      --input artigos_para_migrar.parquet \
      --database-url $DATABASE_URL

Related: #175
Add scripts to facilitate local testing of embeddings migration:

- setup_local_test.sh: Automated setup script
  - Creates test database (govbrnews_test)
  - Restores SQL dump
  - Applies migration 004
  - Shows statistics

- QUICKSTART.md: Step-by-step guide
  - Option 1: Automated script
  - Option 2: Manual steps
  - End-to-end test
  - Troubleshooting

Workflow:
  1. ./setup_local_test.sh (restore dump + apply migration)
  2. Export articles for migration
  3. Test embedding generation with GPU/CPU
  4. Upload back to local DB
  5. Validate results

This allows testing the complete pipeline locally before
running on EC2 L4 with production data.

Related: #175
Fix paths to:
- Dump file: ../data_dump → ../../data_dump
- Migration: ../migrations → ../../scripts/migrations
Detect available PostgreSQL user (current user or postgres)
and use it for all psql/createdb commands.

Fixes: 'role lpmoraes does not exist' error
- Remove hard dependency on pv (progress viewer)
- Fallback to direct psql < dump.sql when pv not available
- Add exit code checking and error handling
- Provide manual command if restore fails

Fixes: dump silently failing when pv command not found
Fix TypeError when uploading embeddings: convert numpy.ndarray
to list before psql insert.

Tested with 100 articles: all uploaded successfully.
Increase content preview from 500 chars to 24,000 chars to better
utilize BGE-M3's 8192 token capacity.

Changes:
- Add MAX_CHARS = 24000 constant
- Use available_chars calculation for content
- Add safety truncation at the end
- Update docstring with BGE-M3 limits

Rationale:
- BGE-M3 supports 8192 tokens (~32k chars)
- Database has articles with content up to 7MB
- Previous 500 char limit was too conservative
- 24k chars ≈ 8k tokens (conservative estimate)

Impact:
- Better embeddings for long articles without summary
- No change for articles with summary (already good)
- Stays within model limits (safety truncation)
@ODenteAzul ODenteAzul self-assigned this Jun 18, 2026
@ODenteAzul ODenteAzul added the enhancement New feature or request label Jun 18, 2026
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