deps: Update dependency pyrefly to >=1.3.0

[renovate]

This PR contains the following updates:

Package	Type	Update	Change	Pending
pyrefly (source)	feature-lint	minor	>=1.2.0 → >=1.3.0	1.3.1

---

Release Notes

facebook/pyrefly (pyrefly)

v1.3.0: Pyrefly v1.3.0

Compare Source

Release date: September 10, 2026

Pyrefly v1.3.0 bundles 934 commits from 71 contributors.

---

🔍Release Highlights

Type Checking

• New diagnostics and more accurate type inference. Pyrefly now catches invalid literal regular expressions, invalid mock.patch targets, unsupported dataclass_transform arguments, incompatible Protocol.__call__ overrides, and unimplemented abstract methods. Pattern-match exhaustiveness, overload resolution, narrowing, and generic inference are also more accurate.
• Better support for major Python frameworks. Pyrefly understands same-file Django reverse relationships, checks SQLAlchemy updates against model fields, and recognizes attributes registered on PyTorch modules.

Language Server

• Search the whole workspace for methods and nested definitions. Workspace symbol search now covers methods, nested classes and functions, and class attributes even in unopened files.
• New editor refactorings and quick fixes. Change Signature updates a function and its call sites together, while new quick fixes remove unused imports and insert assert x is not None. Inlay hints can also insert required imports and link to definitions.

Configuration & CLI

• Target individual Pyrefly errors with standard suppression comments. # type: ignore[pyrefly:<code>] suppresses a specific Pyrefly diagnostic without hiding unrelated errors on the same line.
• Choose how Pyrefly handles untyped dependencies. The new --replace-untyped-imports-with-any option replaces selected third-party packages that lack stubs or a py.typed marker with Any, and pyrefly init translates mypy's follow_untyped_imports setting automatically.
• Baseline files are easier to maintain and review. Baselines can match by concise description instead of source position, use a compact format, show existing errors at reduced severity, remove stale entries with --prune-baseline, and reject them in CI with --error-stale-baseline.

Experimental Extensions

• Much broader shape-aware JAX and NumPy support. New JAX stubs cover array creation, manipulation, and linear algebra, while the new pyrefly-numpy-stubs package brings shape checking to NumPy. These stubs use a new type-level shape DSL, which replaces the old @shaped_array API.
• Expanded Polars and pandas DataFrame schema support. Pyrefly tracks Polars schemas through common DataFrame transformations, with support for typed Series and schema annotations. pandas columns= projections now preserve the requested schema as well.

---

✨ New & Improved

Type Checking

• Pattern matching gained stronger exhaustiveness checking, including tuple subjects and open types such as unions. Open-type exhaustiveness now has its own configurable non-exhaustive-match-open-type error kind.
• Overload selection now follows the latest typing specification more closely, producing a safe common return type for gradual arguments and reducing false positives in complex overloads.
• Type inference and narrowing are more precise for membership tests, equality checks, hasattr, wide Literal unions, callable values, reverse tuple slices, and values assigned from Any.
• Dataclass fields backed by descriptors are now checked for incompatible read and write types under the new bad-dataclass-descriptor error kind.
• String targets passed to unittest.mock.patch are validated, with nonexistent attributes reported as missing-attribute-patch-target warnings.
• Literal regular expressions are checked for invalid patterns and capturing groups under the new regex error kind.
• Django support now understands reverse ForeignKey, OneToOneField, and ManyToManyField relationships in the same file, while Django REST Framework serializers avoid false override errors for common Meta and field patterns.
• SQLAlchemy update().values() checks values against mapped model fields.
• PyTorch modules recognize attributes registered through register_buffer and register_parameter.

Language Server

• Workspace symbol search now includes methods, nested classes, nested functions, and class attributes.
• Cross-file call hierarchy, type hierarchy, and find-references now work without first opening every relevant file.
• A new change-signature refactoring updates a function's parameters and its call sites together.
• New quick fixes remove unused imports and insert assert x is not None when an optional value needs narrowing.
• Inlay hints can add required imports, are clickable for navigation, and now handle callable objects, instance methods, positional arguments, and **kwargs: Unpack[TypedDict] more accurately.
• Rename and navigation are more reliable for relative imports, decorated functions, named dataclass and Pydantic arguments, operators, module paths in strings, and legacy type-parameter declarations.
• Custom pyrefly.lspPath values now work correctly with Windows, home-relative, and workspace-relative paths.
• LSP clients can provide extraSearchPaths and extraProjectExcludes during initialization, improving integration with editors that manage their own import paths and excluded directories.
• Editors can display custom build-system activity and failures through the new pyrefly/typeErrorDisplayStatusChanged notification.

Performance

• TSP now reuses analysis for unopened files instead of solving the same module for every request. In a captured Pylance session, 22,294 unopened-file getComputedType requests fell from 668 seconds to 3.4 seconds, while total request time fell from 671 seconds to 6.4 seconds.
• Unknown-name suggestions are dramatically faster in files with very large scopes. Pyrefly now skips suggestion work for diagnostics that will be discarded and rejects unlikely candidates before computing their full edit distance. A pathological internal case fell from 96.8 seconds to 0.62 seconds, while focused benchmarks improved by 15–1,390x.

Configuration & CLI

• # type: ignore[pyrefly:<code>] comments suppress only the named Pyrefly diagnostic without hiding unrelated errors on the same line.
• The new type-ignore-unknown-tag-behavior option controls how tags belonging to other tools affect Pyrefly diagnostics: they can have no effect, downgrade diagnostics to warnings, or retain the legacy blanket-suppression behavior.
• The new replace-untyped-imports-with-any option replaces selected installed third-party packages with Any when they provide neither stubs nor a py.typed marker.
• pyrefly init automatically translates mypy's global and per-module follow_untyped_imports settings to the new option.
• baseline-matching-mode can match diagnostics by their column or concise description, reducing churn when unrelated code moves.
• baseline-format can write full metadata or a minimal representation containing only the fields needed for matching.
• baseline-error-level can expose matched diagnostics at info, warn, or error severity instead of hiding them, with baseline provenance included in text, JSON, SARIF, and summary output.
• --prune-baseline removes stale entries without recording new errors, while --error-stale-baseline lets CI reject a baseline containing obsolete entries.
• The opt-in treat-all-caps-as-final option treats reassignment of ALL_CAPS names as a bad-assignment.
• Projects can require a compatible Pyrefly version from pyrefly.toml using a PEP 440 version constraint.
• The new python-interpreter-find-command setting supports custom interpreter discovery.
• Multiple --output destinations with different formats can be specified in one CLI invocation.
• New documentation explains how to integrate Pyrefly with Pants through the pants-pyrefly plugin.

Experimental Extensions

• A composable type-level DSL now describes tensor shape transformations, and the JAX, NumPy, and PyTorch stubs have migrated from the decorator-based V1 shape system to direct V2 signatures.
• Shape-aware JAX stubs now cover array creation, indexing, reductions, searching and sorting, FFT, linear algebra, einsum and other contractions, and most of jax.lax.
• The new pyrefly-numpy-stubs package brings shape-aware checking to NumPy alongside the existing PyTorch support.
• The legacy @shaped_array API has been removed; custom shape annotations must migrate to IntTuple-generic classes and the V2 DSL.
• Polars DataFrame analysis now tracks schemas through construction, select, with_columns, group_by().agg(), joins, CSV readers, and lazy/eager conversion, with typed Series, nested and owned dtypes, and schema information from variables, calls, and TypedDicts.
• PEP 593 Annotated[DataFrame, Schema(...)] supports exact and open schema contracts, while the new column-schema-mismatch and duplicate-column errors catch invalid schemas and conflicting output columns before runtime.
• pandas DataFrames built with columns= now project their inferred schema onto the requested column set and order.

---

🐛 Bug fixes

We closed 88 bug issues this release 👏

• #​3653: Eliminated exponential work when nested calls contain container literals by inferring shared expression subtrees once.
• #​4678: Fixed pathological check times exceeding a thousand seconds on small files containing very long non-ASCII lines.
• #​4437: Fixed a stack overflow crash when checking code with a recursive __new__ method. Pyrefly now detects direct recursive __new__ targets.
• #​4459: Fixed a panic when a NamedTuple was defined inline inside a match statement. A dedicated MatchSubject binding key now prevents collisions.
• #​4130: Star imports from py.typed packages installed in site-packages now recognize the package's public names as re-exports.

Thank you to all our contributors who found these bugs and reported them! Did you know this is one of the most helpful contributions you can make to an open-source project? If you find any bugs in Pyrefly we want to know about them! Please open a bug report issue here.

---

📦 Upgrade

pip install --upgrade pyrefly==1.3.0

How to safely upgrade your codebase

Upgrading the version of Pyrefly you're using or a third-party library you depend on can reveal new type errors in your code. Fixing them all at once is often unrealistic. We've written scripts to help you temporarily silence them. After upgrading, follow these steps:

1. pyrefly check --suppress-errors
2. Run your code formatter of choice
3. pyrefly check --remove-unused-ignores
4. Repeat until you achieve a clean formatting run and a clean type check.

This will add # pyrefly: ignore comments to your code, enabling you to silence errors and return to fix them later. This can make the process of upgrading a large codebase much more manageable.

Read more about error suppressions in the Pyrefly documentation.

---

🖊️ Contributors this release

@​shobhitmehro, @​rchen152, @​asukaminato0721, generatedunixname2066905484085733, @​yangdanny97, @​grievejia, @​kinto0, generatedunixname949130641157030, @​lyydsheep, @​ndmitchell, @​stroxler, generatedunixname89002005232357, @​connernilsen, @​jcarreiro, @​patrickswedish, @​randolf-scholz, @​vincevannoort, @​renz011tzar, @​ak4-sh, @​tobyh-canva, @​KotlinIsland, @​Sanjays2402, @​alexander-beedie, David Tolnay, @​javabster, @​samwgoldman, @​IBlackVoid, @​nitishagar, @​WilliamK112, @​NathanTempest, @​ytausch, @​xaskii, generatedunixname1431085361989520, @​a7or, @​markselby9, @​heejaechang, Willem Kokke, @​dillydill123, @​kakolla, generatedunixname1699489071355949, @​ting-hong-shieh, @​kavix, @​Vishwaspatel2401, @​danielgaskins, generatedunixname89002005307016, @​fangyi-zhou, @​MarcoGorelli, @​thomaspolasek, @​tague, @​paranoa233, @​d34db3ff, @​AMR5210, @​DarkNightForge, @​ternaus, @​austin3dickey, @​cakeni, @​lolpack, @​jakevdp, @​Pager-dot, @​tkim602, @​anishfyi, @​mangeshraut712, @​jorenham, @​Pyxelate, @​DetachHead, @​kavyansh18, @​rootkiller6788, @​auscompgeek, Khan Mohammed, @​KSAGlory, @​devteamaegis

---

Please note: These release notes summarize major updates and features. For brevity, not all individual commits are listed.

---

Configuration

📅 Schedule: (UTC)

• Branch creation
  • At any time (no schedule defined)
• Automerge
  • At any time (no schedule defined)

🚦 Automerge: Enabled.

♻ Rebasing: Whenever PR is behind base branch, or you tick the rebase/retry checkbox.

🔕 Ignore: Close this PR and you won't be reminded about this update again.

---

• If you want to rebase/retry this PR, check this box

---

This PR was generated by Mend Renovate. View the repository job log.