feat: publish the Milestone 3 CON preview

.githooks/pre-commit

@@ -0,0 +1,4 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+exec pixi run pre-commit run --hook-stage pre-commit "$@"

.github/workflows/con-pages-preview.yml

@@ -0,0 +1,104 @@
+name: CON Pages preview
+
+on:
+  pull_request:
+    branches:
+      - main
+  push:
+    branches:
+      - main
+      - codex/milestone-3
+  workflow_dispatch:
+    inputs:
+      deploy:
+        description: Deploy this exact ref to the github-pages environment
+        required: true
+        default: false
+        type: boolean
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    name: Build the backend-free CON artifact
+    runs-on: ubuntu-24.04
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    concurrency:
+      group: con-pages-build-${{ github.ref }}
+      cancel-in-progress: true
+
+    steps:
+      - name: Check out the pinned recursive source tree
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        with:
+          fetch-depth: 0
+          persist-credentials: false
+          submodules: recursive
+
+      - name: Verify the accepted clean-migration checkpoints
+        shell: bash
+        run: |
+          set -euo pipefail
+          readonly parent_checkpoint=f54cf5fdb2b5ae4bf03fe6939246316fd9ec818d
+          readonly site_checkpoint=a122e506de9e4a13473edbe8d74a950d74032a16
+          readonly checkpoint_ref=refs/remotes/origin/codex/clean-migration
+
+          git fetch --no-tags --no-recurse-submodules origin \
+            refs/heads/codex/clean-migration:${checkpoint_ref}
+          test "$(git rev-parse "${checkpoint_ref}")" = "${parent_checkpoint}"
+
+          git -C submodules/centerforopenneuroscience.org fetch \
+            --no-tags --no-recurse-submodules origin \
+            refs/heads/codex/clean-migration:${checkpoint_ref}
+          test "$(git -C submodules/centerforopenneuroscience.org \
+            rev-parse "${checkpoint_ref}")" = "${site_checkpoint}"
+
+      - name: Install the locked Pixi environment
+        uses: prefix-dev/setup-pixi@f00437f565399d418b0acc85936d12c1fb668347 # v0.10.1
+        with:
+          cache: true
+          cache-write: ${{ github.event_name != 'pull_request' }}
+          locked: true
+          pixi-version: v0.73.0
+
+      - name: Run focused contracts
+        run: pixi run test-pages
+
+      - name: Build twice and exercise the static editor
+        run: pixi run test-pages-browser
+
+      - name: Upload the reviewed static artifact
+        uses: actions/upload-pages-artifact@fc324d3547104276b827a68afc52ff2a11cc49c9 # v5.0.0
+        with:
+          include-hidden-files: true
+          path: build/pages-preview/orinoco-lite-dev
+
+  deploy:
+    name: Deploy the reviewed Pages artifact
+    needs: build
+    if: >-
+      github.event_name == 'push' ||
+      (github.event_name == 'workflow_dispatch' && inputs.deploy)
+    runs-on: ubuntu-24.04
+    timeout-minutes: 10
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    permissions:
+      contents: read
+      id-token: write
+      pages: write
+    concurrency:
+      group: con-pages-deployment
+      cancel-in-progress: true
+
+    steps:
+      - name: Configure the Pages deployment
+        uses: actions/configure-pages@45bfe0192ca1faeb007ade9deae92b16b8254a0d # v6.0.0
+
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@cd2ce8fcbc39b97be8ca5fce6e763baed58fa128 # v5.0.0

.github/workflows/upstream-pages-trial.yml

@@ -0,0 +1,101 @@
+name: Upstream Psychoinformatics Pages trial
+
+on:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+concurrency:
+  group: upstream-psychoinformatics-pages
+  cancel-in-progress: true
+
+jobs:
+  build-and-deploy:
+    runs-on: ubuntu-24.04
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    permissions:
+      contents: read
+      pages: write
+      id-token: write
+
+    steps:
+      - name: Check out the coordination branch
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+
+      - name: Check out the pinned upstream site only
+        run: |
+          git submodule sync -- submodules/www-from-model
+          git submodule update --init --depth 1 -- submodules/www-from-model
+          git -C submodules/www-from-model config core.worktree \
+            "${GITHUB_WORKSPACE}/submodules/www-from-model"
+          git -C submodules/www-from-model submodule update --init --depth 1 -- themes/congo
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
+        with:
+          version: 0.12.1
+          enable-cache: false
+
+      - name: Install git-annex
+        run: uv tool install git-annex==10.20260717
+
+      - name: Hydrate upstream annexed assets
+        run: |
+          git -C submodules/www-from-model fetch --depth 1 \
+            origin \
+            +010ca44f751d2ab60b9d4ad58c5931d1804e3c9e:refs/remotes/origin/git-annex
+          git -C submodules/www-from-model remote add upstream \
+            https://hub.psychoinformatics.de/www/www-from-model.git
+          git -C submodules/www-from-model fetch --depth 1 \
+            upstream \
+            +010ca44f751d2ab60b9d4ad58c5931d1804e3c9e:refs/remotes/upstream/git-annex
+          git -C submodules/www-from-model config --add annex.private true
+          git -C submodules/www-from-model annex init
+          git -C submodules/www-from-model annex get .
+          test -z "$(git -C submodules/www-from-model annex find --not --in=here)"
+
+      - name: Install Hugo Extended
+        uses: peaceiris/actions-hugo@2752ce1d29631191ea3f27c23495fa06139a5b78 # v3.2.1
+        with:
+          hugo-version: 0.154.5
+          extended: true
+
+      - name: Read the Pages deployment URL
+        id: pages
+        uses: actions/configure-pages@45bfe0192ca1faeb007ade9deae92b16b8254a0d # v6.0.0
+
+      - name: Build the unmodified upstream source
+        env:
+          BASE_URL: ${{ steps.pages.outputs.base_url }}
+        run: |
+          hugo \
+            --minify \
+            --source submodules/www-from-model \
+            --destination "${RUNNER_TEMP}/upstream-site" \
+            --baseURL "${BASE_URL%/}/"
+
+      - name: Adapt and audit the generated Pages artifact
+        env:
+          BASE_PATH: ${{ steps.pages.outputs.base_path }}
+        run: |
+          python3 tools/adapt_upstream_pages.py \
+            "${RUNNER_TEMP}/upstream-site" \
+            --base-path "${BASE_PATH:-/}"
+          python3 tools/adapt_upstream_pages.py \
+            "${RUNNER_TEMP}/upstream-site" \
+            --base-path "${BASE_PATH:-/}" \
+            --check-only
+          test -f "${RUNNER_TEMP}/upstream-site/index.html"
+          test -f "${RUNNER_TEMP}/upstream-site/graph.json"
+
+      - name: Upload the Pages artifact
+        uses: actions/upload-pages-artifact@fc324d3547104276b827a68afc52ff2a11cc49c9 # v5.0.0
+        with:
+          path: ${{ runner.temp }}/upstream-site
+
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@cd2ce8fcbc39b97be8ca5fce6e763baed58fa128 # v5.0.0

.gitignore

@@ -1,5 +1,8 @@
 # Local deployment output and credentials.
 /build/
 /dist/
+/node_modules/
 *.env
 !.env.example
+__pycache__/
+*.py[cod]

.gitmodules

@@ -1,96 +1,96 @@
 [submodule "submodules/artwork"]
 	path = submodules/artwork
-	url = https://hub.psychoinformatics.de/orinoco/artwork.git
+	url = https://github.com/leej3/artwork.git
 	branch = main
 [submodule "submodules/bids-things"]
 	path = submodules/bids-things
-	url = https://hub.psychoinformatics.de/orinoco/bids-things.git
+	url = https://github.com/leej3/bids-things.git
 	branch = main
 [submodule "submodules/centerforopenneuroscience.org"]
 	path = submodules/centerforopenneuroscience.org
-	url = https://github.com/con/centerforopenneuroscience.org.git
-	branch = master
+	url = https://github.com/leej3/centerforopenneuroscience.org.git
+	branch = orinoco-lite
 [submodule "submodules/curatee-kit"]
 	path = submodules/curatee-kit
-	url = https://hub.psychoinformatics.de/orinoco/curatee-kit.git
+	url = https://github.com/leej3/curatee-kit.git
 	branch = main
 [submodule "submodules/dump-research-info"]
 	path = submodules/dump-research-info
 	url = https://github.com/con/dump-research-info.git
 	branch = agent/git-native-con-metadata
 [submodule "submodules/dump-things-pyclient"]
 	path = submodules/dump-things-pyclient
-	url = https://hub.psychoinformatics.de/orinoco/dump-things-pyclient.git
+	url = https://github.com/leej3/dump-things-pyclient.git
 	branch = master
 [submodule "submodules/dump-things-service"]
 	path = submodules/dump-things-service
-	url = https://hub.psychoinformatics.de/orinoco/dump-things-service.git
+	url = https://github.com/leej3/dump-things-service.git
 	branch = master
 [submodule "submodules/dump-things-service-mirror"]
 	path = submodules/dump-things-service-mirror
-	url = https://hub.psychoinformatics.de/orinoco/dump-things-service-mirror.git
+	url = https://github.com/leej3/dump-things-service-mirror.git
 	branch = master
 [submodule "submodules/find-things"]
 	path = submodules/find-things
-	url = https://hub.psychoinformatics.de/orinoco/find-things.git
+	url = https://github.com/leej3/find-things.git
 	branch = main
 [submodule "submodules/flatson"]
 	path = submodules/flatson
-	url = https://hub.psychoinformatics.de/orinoco/flatson.git
+	url = https://github.com/leej3/flatson.git
 	branch = main
 [submodule "submodules/flatson-js"]
 	path = submodules/flatson-js
-	url = https://hub.psychoinformatics.de/orinoco/flatson-js.git
+	url = https://github.com/leej3/flatson-js.git
 	branch = main
 [submodule "submodules/flatsonpy"]
 	path = submodules/flatsonpy
-	url = https://hub.psychoinformatics.de/orinoco/flatsonpy.git
+	url = https://github.com/leej3/flatsonpy.git
 	branch = main
 [submodule "submodules/flow"]
 	path = submodules/flow
-	url = https://hub.psychoinformatics.de/orinoco/flow.git
+	url = https://github.com/leej3/flow.git
 	branch = main
 [submodule "submodules/psyinf-pool-files-public"]
 	path = submodules/psyinf-pool-files-public
-	url = https://hub.psychoinformatics.de/orinoco/psyinf-pool-files-public.git
+	url = https://github.com/leej3/psyinf-pool-files-public.git
 	branch = main
 [submodule "submodules/query-things"]
 	path = submodules/query-things
-	url = https://hub.psychoinformatics.de/orinoco/query-things.git
+	url = https://github.com/leej3/query-things.git
 	branch = main
 [submodule "submodules/research-information-ui-assets"]
 	path = submodules/research-information-ui-assets
-	url = https://hub.psychoinformatics.de/orinoco/research-information-ui-assets.git
+	url = https://github.com/leej3/research-information-ui-assets.git
 	branch = main
 [submodule "submodules/shacl-tulip"]
 	path = submodules/shacl-tulip
-	url = https://hub.psychoinformatics.de/orinoco/shacl-tulip.git
-	branch = main
-[submodule "submodules/shacl-vue"]
-	path = submodules/shacl-vue
-	url = https://hub.psychoinformatics.de/orinoco/shacl-vue.git
+	url = https://github.com/leej3/shacl-tulip.git
 	branch = main
 [submodule "submodules/some-things"]
 	path = submodules/some-things
-	url = https://hub.psychoinformatics.de/orinoco/some-things.git
+	url = https://github.com/leej3/some-things.git
 	branch = main
 [submodule "submodules/things-enrichment-tools"]
 	path = submodules/things-enrichment-tools
-	url = https://hub.psychoinformatics.de/orinoco/things-enrichment-tools.git
+	url = https://github.com/leej3/things-enrichment-tools.git
 	branch = main
 [submodule "submodules/things-graph-renderer"]
 	path = submodules/things-graph-renderer
-	url = https://hub.psychoinformatics.de/orinoco/things-graph-renderer.git
+	url = https://github.com/leej3/things-graph-renderer.git
 	branch = main
 [submodule "submodules/things-schemas"]
 	path = submodules/things-schemas
-	url = https://hub.psychoinformatics.de/orinoco/things-schemas.git
+	url = https://github.com/leej3/things-schemas.git
 	branch = main
 [submodule "submodules/tools"]
 	path = submodules/tools
-	url = https://hub.psychoinformatics.de/orinoco/tools.git
+	url = https://github.com/leej3/tools.git
 	branch = main
 [submodule "submodules/www-from-model"]
 	path = submodules/www-from-model
-	url = https://hub.psychoinformatics.de/www/www-from-model.git
+	url = https://github.com/leej3/www-from-model.git
 	branch = main
+[submodule "submodules/pool.psychoinformatics.de-ui"]
+	path = submodules/pool.psychoinformatics.de-ui
+	url = https://github.com/leej3/pool.psychoinformatics.de-ui.git
+	branch = codex/local-deployment

.pre-commit-config.yaml

@@ -0,0 +1,8 @@
+repos:
+  - repo: local
+    hooks:
+      - id: snapper
+        name: snapper semantic line breaks
+        entry: snapper --in-place
+        language: system
+        files: '\.(md|markdown|rst|txt)$'