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Add allen-atlas-assets atlases to documentation - #587

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With brainglobe-atlasapi v3.1.0 atlases from s3://allen-atlas-assets are directly accessible via BrainGlobe.

This documents the process of fetching atlases from this remote, and the names, versions, and resolutions available.

@IgorTatarnikov
IgorTatarnikov requested a review from a team November 13, 2026 18:15
The Allen Adult Mouse Brain Atlas (CCFv3), as published by the Allen Institute. The 2011 version uses a Nissl
reference image; later versions use the STPT reference image.

Available versions: `2011`, `2015`, `2016`, `2017`

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This is cool but totally breaks brainglobe versioning. Here versioning becomes which atlas release as opposed to which brainglobe version. What if something is wrong in the 2011 atlas? how will this be updated, what would it then be called.

We can could franken version this and have 2011.1 with after the decimal place being the brainglobe version? then if the user specifies the version they have to specify both... its tricky but ignoring it has the potential to be quite confusing here

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