Material for a ~half-day tutorial on segmentation and modeling for cryo-ET, which Ben presents at the University of Michigan CryoET Workshop.
Live site: https://baradlab.com/michigan_tutorial
This is a Material for MkDocs site, versioned with mike. Two editions are published:
| Edition | Tools covered | Source | URL |
|---|---|---|---|
| 2026 (latest) | MemBrain-seg, Mosaic, Surface Morphometrics, Surforama | main branch |
https://baradlab.com/michigan_tutorial/ (and /2026/) |
| 2024 (archived) | MemBrain-Seg, Dragonfly, Surface Morphometrics | archive/2024 branch |
https://baradlab.com/michigan_tutorial/2024/ |
Use the version selector in the site header to switch between editions.
- Pushing to
maintriggers.github/workflows/build-and-deploy-docs.yml, which runsmike deploy --push --update-aliases 2026 latest— i.e. it (re)publishes the 2026 edition aslatest. It never touches the archived 2024 version. - The 2024 edition is a frozen one-time deploy from the
archive/2024branch (see below). Its source is preserved on that branch.
python -m venv .venv-docs
.venv-docs/bin/pip install mkdocs-material mike
.venv-docs/bin/mkdocs serve # live preview of the current branch's editionThe current edition deploys automatically from main via CI. The one-time/manual deploys are:
# One-time: publish the archived 2024 edition
git checkout archive/2024
mike deploy --push 2024
git checkout main
# One-time: make `latest` the default landing page (root redirect)
mike set-default --push latestLicensed under the BSD license. Please feel free to reuse liberally!