chore: bump the actions group across 1 directory with 3 updates

[dependabot]

Bumps the actions group with 3 updates in the / directory: conda-incubator/setup-miniconda, ruby/setup-ruby and r-lib/actions.

Updates conda-incubator/setup-miniconda from 3.3.0 to 4.0.1

Release notes

Sourced from conda-incubator/setup-miniconda's releases.

Version 4.0.1

What's Changed

• Fix MultipleKeysError when user condarc declares auto_activate by @​jezdez in conda-incubator/setup-miniconda#500

Full Changelog: conda-incubator/setup-miniconda@v4.0.0...v4.0.1

Version 4.0.0

Breaking Changes

• #459: Upgrade action runtime to Node.js 24.x (requires runners with Node 24 support; this is the reason for the v4 major bump)
• #450: Switch action build to ESM (for @actions/exec v3)

Features and Enhancements

• #469: Add conda-init input to optionally skip conda init and document activation for restricted environments
• #482: Add channels parsing utility and URL validation
• #481: Enable stricter TypeScript checks and typing
• #480: Add more tests, increase coverage, add Codecov integration and coverage badge
• #479: Add TypeDoc-based API docs, generation and checks; configure GitHub Pages and Netlify previews

Fixes

• #465: Fix double channel configuration being applied
• #467: Speed up Windows post-run cleanup by moving the extracted packages directory instead of removing files one by one
• #470: Fix name-version-build syntax expansion and add tests
• #475: Split shell init and activation of the test environment to remove spurious warning
• #498: Skip Netlify preview for Dependabot PRs

Performance

• #486: Remove HTML index scraping for Miniconda version validation
• #487: Parallelize Windows takeown calls with Promise.all
• #488: Replace isDefaultEnvironment subprocess with local YAML reads
• #489: Replace conda config subprocesses with direct .condarc YAML writes

Tasks and Maintenance

• #444: Bump conda-incubator/setup-miniconda from 3.2.0 to 3.3.0
• #445: Bump actions/checkout from 6.0.1 to 6.0.2
• #449: Bump @​actions/exec from 2.0.0 to 3.0.0
• #456, #484, #491: Bump actions/upload-artifact
• #460: Bump actions/download-artifact from 7.0.0 to 8.0.1

... (truncated)

Changelog

Sourced from conda-incubator/setup-miniconda's changelog.

CHANGELOG

v4.0.1 (2026-04-24)

Fixes

• Fix MultipleKeysError on conda 25.11+ when a user-supplied condarc-file already declares auto_activate: now only one of auto_activate / auto_activate_base is written to .condarc, preferring whichever key the user's existing condarc uses.
• Add auto_activate to the boolean coercion set so its value is serialized as a YAML boolean when it is the chosen canonical key.
• Add local_repodata_ttl to KNOWN_CONDARC_KEYS to silence a spurious "Unrecognized condarc key" warning for a valid conda key.

[v4.0.0] (2026-04-23)

Breaking Changes

• #459[459]: Upgrade action runtime to Node.js 24.x (requires runners with Node 24 support; this is the reason for the v4 major bump)
• #450[450]: Switch action build to ESM (for @actions/exec v3)

Features and Enhancements

• #469[469]: Add conda-init input to optionally skip conda init and document activation for restricted environments
• #482[482]: Add channels parsing utility and URL validation
• #481[481]: Enable stricter TypeScript checks and typing
• #480[480]: Add more tests, increase coverage, add Codecov integration and coverage badge
• #479[479]: Add TypeDoc-based API docs, generation and checks; configure GitHub Pages and Netlify previews

Fixes

• #465[465]: Fix double channel configuration being applied
• #467[467]: Speed up Windows post-run cleanup by moving the extracted packages directory instead of removing files one by one
• #470[470]: Fix name-version-build syntax expansion and add tests
• #475[475]: Split shell init and activation of the test environment to remove spurious warning

Performance

• #486[486]: Remove HTML index scraping for Miniconda version validation
• #487[487]: Parallelize Windows takeown calls with Promise.all
• #488[488]: Replace isDefaultEnvironment subprocess with local YAML reads

... (truncated)

Commits

• 8ee1f36 Fix MultipleKeysError when user condarc declares auto_activate (#500)
• bce0bd8 Prepare v4 release (#499)
• 78fb0ff ci(docs): skip Netlify preview for Dependabot PRs (#498)
• d32e72e Bump @​actions/core from 3.0.0 to 3.0.1 (#496)
• 3e251ae Bump actions/upload-artifact from 4 to 7 (#491)
• 7ff02ae Bump actions/upload-pages-artifact from 3 to 5 (#492)
• 65b62b8 Bump actions/deploy-pages from 4 to 5 (#494)
• 1eb4d38 Bump marocchino/sticky-pull-request-comment from 2 to 3 (#493)
• bfb6f7e Bump codecov/codecov-action from 5 to 6 (#495)
• 77236ef Merge pull request #489 from conda-incubator/perf/direct-condarc-write
• Additional commits viewable in compare view

Updates ruby/setup-ruby from 1.305.0 to 1.306.0

Release notes

Sourced from ruby/setup-ruby's releases.

v1.306.0

What's Changed

• Add truffleruby-34.0.1,truffleruby+graalvm-34.0.1 by @​ruby-builder-bot in ruby/setup-ruby#909

Full Changelog: ruby/setup-ruby@v1.305.0...v1.306.0

Commits

• c4e5b13 Add truffleruby-34.0.1,truffleruby+graalvm-34.0.1
• See full diff in compare view

Updates r-lib/actions from 2.11.4 to 2.12.0

Changelog

Sourced from r-lib/actions's changelog.

v2.12.0 (2026-04-29)

• All node.js actions use node 24 now. Relatedly, all example workflows use recent versions of actions that use node 24.

• [setup-r] now uses use-public-rspm: true by default on Linux and Windows. macOS binaries require further opt-in with use-public-rspm: always.

• It is now possible to require actions to be pinned to a full-length commit SHA in repositories using r-lib/actions (#1070).

• [setup-pandoc][setup-r-dependencies] now default to Pandoc version 3.8.3.

• [setup-r-dependencies] now includes the R architecture in the cache key, so caches for macos-15 (Apple Silicon) and macos-15-intel (Rosetta/x86_64) no longer collide (#1035).

• [setup-r] run apt-get update without -qq on Linux, to make debugging update failures easier (#1058).

v2.11.4 (2025-10-08)

• [setup-r] correctly installs Rtools again on aarch64 Windows, as needed.

v2.11.3 (2025-03-24)

• [setup-r] now supports Rtools45, and installs it by default for R >= 4.5.0.

v2.11.2 (2025-02-19)

• [setup-r] now installs gfortran 14.2 for R 4.5.0 and later (#965).

• [setup-r] now does not use PPM on aarch64 Linux, because PPM does not have binary packages for aarch64 Linux, and it would send x86_64 binarires for aarch64 systems as well.

• [setup-r] now unlinks pkg-config@0.29.2 on macOS silently, to avoid an error from the problem matchers (#973).

• [setup-r-dependencies] now supports dependencies: FALSE (@​eitsupi, #961).

• [setup-r-dependencies] now creates the R_LIBS_USER and R_LIBS_SITE library directories (#974).

• [setup-r-dependencies] now prints the R repo status (#975).

... (truncated)

Commits

• a51a801 Pin SHA of dependent actions (#1071)
• 9f58233 Update NEWS heading before release (#1068)
• 59b36d9 No need to test on windows/oldrel/4 any more (#1069)
• f50f115 Update pandoc version to 3.8.3 (#1067)
• f25a31a Pin third party actions in examples (#1066)
• 5c785af Update NEWS.md for recent changes (#1065)
• ec83a9d [setup-r] use-public-rspm is on by default on Windows/Linux (#1063)
• 9c0b300 Explain better how to set multiple repos for setup-r (#1010)
• 4529b6b Fix syntax errors reported by the VSCode extension. (#1047)
• 2cea488 Do not use -qq in apt-get update (#1058)
• Additional commits viewable in compare view

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