Issues

• Some questions about seeds

  aertslab/SCENIC#493 · Filter by author The-G-Cat opened on Nov 30, 2025

• In ctx step, can 100kbp and 500bp .feather file be simlutaneously?

  aertslab/SCENIC#485 · Filter by author Raceyuki opened on May 26, 2025

• RSS Score Variability

  aertslab/SCENIC#484 · Filter by author elkhayarisoufiane opened on Mar 27, 2025

• Error in initializeScenic

  aertslab/SCENIC#480 · Filter by author pobmmu opened on Mar 5, 2025

• How to generate this heatmap plz

  aertslab/SCENIC#479 · Filter by author CampingOnSeabed opened on Feb 12, 2025

• AUCell comparability for integrated data

  aertslab/SCENIC#477 · Filter by author ashenflower opened on Jan 21, 2025

• Problem running pyscenic grn

  aertslab/SCENIC#475 · Filter by author Teerapon789 opened on Jan 6, 2025

• problem with initializeScenic()

  aertslab/SCENIC#471 · Filter by author Mancang-Yu opened on Nov 25, 2024
  1

• Can this be used for bulk-tissue data?

  aertslab/SCENIC#467 · Filter by author guandailu opened on Sep 19, 2024

• initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1)

  aertslab/SCENIC#461 · Filter by author YSYL-FSH opened on Jul 1, 2024
  1

• shiny::runApp NOT FOUND

  aertslab/SCENIC#455 · Filter by author TZUwang opened on May 23, 2024
  1

• No questions here, please! runSCENIC_3_scoreCells :Error in signif(trhAssignment, 3)

  aertslab/SCENIC#454 · Filter by author ManarHashemTaha opened on May 14, 2024

• Error in file(con, "w") : all connections are in use

  aertslab/SCENIC#453 · Filter by author TZUwang opened on Apr 30, 2024
  2

• Installation Error

  aertslab/SCENIC#451 · Filter by author parkjooyoung99 opened on Mar 26, 2024
  1

• Running GRNBoost as a batch job

  aertslab/SCENIC#449 · Filter by author MehvesOzel opened on Mar 19, 2024

• could not find function "AUCell_createViewerApp"

  aertslab/SCENIC#448 · Filter by author Eunice0519 opened on Mar 19, 2024
  2

• what is the difference between "motifAnnotations" and "motifAnnotations_hgnc_v9" , and what impact will it have on the results?

  aertslab/SCENIC#447 · Filter by author Chenchen3Chen opened on Mar 13, 2024

• Could not initialize SCENIC

  aertslab/SCENIC#446 · Filter by author synatkeamsk opened on Mar 3, 2024
  1

• Scenic on HPC

  aertslab/SCENIC#445 · Filter by author Sogand65 opened on Feb 27, 2024
  1

• Details about plot SCENIC results with cytoscape

  aertslab/SCENIC#443 · Filter by author DiracZhu1998 opened on Feb 16, 2024
  1

• Error message during running runSCENIC_3_scoreCells()

  aertslab/SCENIC#439 · Filter by author jiuquzjw opened on Jan 18, 2024
  7

• run_SCENIC_2_createRegulons(): Warning

  aertslab/SCENIC#438 · Filter by author btsanketh opened on Jan 11, 2024
  2

• RSS top eRegulon jaccard heatmap

  aertslab/SCENIC#436 · Filter by author alirosen opened on Jan 4, 2024

• Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores,

  aertslab/SCENIC#429 · Filter by author rraky opened on Dec 6, 2023
  1

• scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget")) #** Only for toy run!!

  aertslab/SCENIC#428 · Filter by author kakaisi opened on Nov 30, 2023