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chore(deps): bump the all-dependencies group across 1 directory with 11 updates#239

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chore(deps): bump the all-dependencies group across 1 directory with 11 updates#239
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dependabot/uv/all-dependencies-804f845608

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Bumps the all-dependencies group with 11 updates in the / directory:

Package From To
platformdirs 4.9.6 4.10.0
numpy 2.4.4 2.5.1
scipy 1.17.1 1.18.0
torch 2.12.0 2.12.1
hydra-core 1.3.2 1.3.4
tensorboard 2.20.0 2.21.0
pyscf 2.13.0 2.13.1
mypy 2.1.0 2.2.0
pytest 9.0.3 9.1.1
ruff 0.15.12 0.15.20
types-pyyaml 6.0.12.20260510 6.0.12.20260518

Updates platformdirs from 4.9.6 to 4.10.0

Release notes

Sourced from platformdirs's releases.

4.10.0

What's Changed

New Contributors

Full Changelog: tox-dev/platformdirs@4.9.6...4.10.0

Changelog

Sourced from platformdirs's changelog.

########### Changelog ###########

4.10.0 (2026-05-28)

  • ✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_preference_dir :pr:491
  • ✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR :pr:490
  • chore: improve platformdirs maintenance path :pr:488 - by :user:lphuc2250gma

4.9.6 (2026-04-09)

  • 🐛 fix(release): use double quotes for tag variable expansion :pr:477

4.9.5 (2026-04-06)

  • 📝 docs(appauthor): clarify None vs False on Windows :pr:476
  • Separates implementations of macOS dirs that share a default :pr:473 - by :user:Goddesen
  • Remove persist-credentials: false from release job :pr:472
  • fix: do not duplicate site dirs in Unix.iter_{config,site}_dirs() when use_site_for_root is active :pr:469 - by :user:viccie30
  • 🔧 fix(type): resolve ty 0.0.25 type errors :pr:468
  • 🔒 ci(workflows): add zizmor security auditing :pr:467
  • 🐛 fix(release): generate docstrfmt-compatible changelog entries :pr:463

4.9.4 (2026-03-05)

  • [pre-commit.ci] pre-commit autoupdate :pr:461 - by :user:pre-commit-ci[bot]
  • Update README.md
  • 📝 docs: add project logo to documentation :pr:459
  • Standardize .github files to .yaml suffix
  • build(deps): bump the all group with 2 updates :pr:457 - by :user:dependabot[bot]
  • Move SECURITY.md to .github/SECURITY.md
  • Add permissions to workflows :pr:455
  • Add security policy
  • [pre-commit.ci] pre-commit autoupdate :pr:454 - by :user:pre-commit-ci[bot]

4.9.2 (2026-02-16)

  • 📝 docs: restructure following Diataxis framework :pr:448

... (truncated)

Commits
  • 04cb136 Release 4.10.0
  • 078bc61 ✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_pr...
  • d279747 ✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR (#490)
  • 4116391 [pre-commit.ci] pre-commit autoupdate (#489)
  • dbc63f5 chore: improve platformdirs maintenance path (#488)
  • 9265108 [pre-commit.ci] pre-commit autoupdate (#487)
  • 9f857ec [pre-commit.ci] pre-commit autoupdate (#486)
  • a76e777 [pre-commit.ci] pre-commit autoupdate (#484)
  • 903fd9f [pre-commit.ci] pre-commit autoupdate (#483)
  • a5da35d build(deps): bump astral-sh/setup-uv from 8.0.0 to 8.1.0 in the all group (#482)
  • Additional commits viewable in compare view

Updates numpy from 2.4.4 to 2.5.1

Release notes

Sourced from numpy's releases.

v2.5.1 (July 4, 2026)

NumPy 2.5.1 Release Notes

The NumPy 2.5.1 is a patch release that fixes bugs discovered after the 2.5.0 release. The most noticeable is the fix is to the numpy datetime cython API which should allow downstream to support NumPy versions older than 2.5. Preparation for Python 3.15 continues along with typing improvements.

This release supports Python versions 3.12-3.14

Changes

  • The minimum supported GCC version has been updated from 9.3.0 to 10.3.0

    (gh-31843)

Contributors

A total of 10 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Adhyan Gupta +
  • Ankit Ahlawat
  • Charles Harris
  • Iason Krommydas
  • Joren Hammudoglu
  • Kumar Aditya
  • Nathan Goldbaum
  • Sebastian Berg
  • Ties Jan Hefting +
  • Vineet Kumar

Pull requests merged

A total of 20 pull requests were merged for this release.

  • #31707: MAINT: Prepare 2.5.x for further development
  • #31721: CI: fix new cython-lint errors (#31711)
  • #31723: MAINT: Update meson to match main
  • #31729: TST: use setup-sde instead of curl to get SDE binaries (#31727)
  • #31829: BUG: Relax finfo to be easier accessible for all user dtypes...
  • #31831: TYP: Fix flatiter.__next__ return type for object_ and...
  • #31832: BUG: avoid deadlocks using NpyString API (#31682)
  • #31833: BUG: fix out array leak in reduceat and accumulate when dtype...
  • #31835: BUG: fix numpy datetime cython APIs to be compatible with older...
  • #31836: TYP: Fix incorrect dtype inference of asarray([]) (#31732)
  • #31837: TYP: Fix np.ma.masked_array 2.5.0 regression
  • #31838: FIX: Refactor error handling in array_setstate to prevent typecode...
  • #31839: TST: xfail multithreaded BLAS test more generously
  • #31840: MAINT: Rename subroutine for crackfortran tests

... (truncated)

Commits
  • 5e1d03f Merge pull request #31863 from charris/prepare-2.5.1
  • ad0b66b REL: Prepare for the NumPy 2.5.1 release.
  • 9df8516 Merge pull request #31858 from charris/backport-31688
  • 4dee265 Merge pull request #31857 from charris/backport-31775
  • dc8d553 Merge pull request #31856 from charris/backport-31846
  • 67cb4a8 fix:Signed integer overflow in datetime.c (#31688)
  • baa2589 TST: Clean up imports, formatting, and assertions
  • 2fe5ba4 TEST: Refactor tests to use np.testing.assert_raises_regex per review
  • bb46581 MAINT: Remove deprecated Python recursion fix
  • 8f34214 MAINT: Move SeedSequence recursion guard to C-layer and add tests
  • Additional commits viewable in compare view

Updates scipy from 1.17.1 to 1.18.0

Release notes

Sourced from scipy's releases.

SciPy 1.18.0 Release Notes

SciPy 1.18.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.18.x branch, and on adding new features on the main branch.

This release requires Python 3.12-3.14 and NumPy 2.0.0 or greater.

Highlights of this release

  • SciPy now supports three different build modes for BLAS and LAPACK LP64/ILP64 support, and machinery is provided for downstream cython_lapack consumers to gracefully handle LP64/ILP64 backend builds. ILP64 support has been substantially improved across the SciPy library.
  • Remaining Fortran to C translations have been completed---an experimental Fortran-free build option is now available to developers for testing purposes. Developer feedback is welcome on Fortran-free builds.
  • scipy.signal.whittaker_henderson now provides access to Whittaker-Henderson smoothing of a discrete signal.
  • A large number of scipy.stats functions now support lazy arrays and JAX JIT. Array API support has been improved substantially in SciPy, with at least 21 functions gaining new support in this release. 16 scipy.stats functions have also gained support for MArray input.

New features

scipy.fft improvements

  • SciPy's internal FFT backend has switched from pocketfft to its successor package ducc0.fft, which features several incremental improvements. The most significant of those from SciPy's perspective is probably that storage requirements for internally cached plans have been significantly reduced for most long 1D transforms. Plans that require more storage than 1MB will no longer be cached; this mainly affects huge 1D transforms of prime and near-prime sizes.

scipy.interpolate improvements

... (truncated)

Commits
  • 54ef542 REL: 1.18.0 release commit
  • a45e463 Merge pull request #25395 from tylerjereddy/treddy_prep_1.18.0_final
  • ee2442e TYP, MAINT, TST: PR 25395 revisions
  • 3225154 DOC: PR 25395 revisions
  • 14c7bd7 TYP: Fix mypy errors with pytest==9.1.0 (#25410)
  • 71522e9 DOC: revise SciPy 1.18.0 release notes
  • 92f8482 MAINT: fix errors from pytest 9.1 (#25378)
  • 7b27bf4 TST, MAINT: modernize spatial tests for pytest 10 (#25376)
  • d05b640 Merge pull request #25347 from tylerjereddy/treddy_version_bump_1.18.0rc3
  • e60fe8b REL: set to 1.18.0rc3 unreleased
  • Additional commits viewable in compare view

Updates torch from 2.12.0 to 2.12.1

Release notes

Sourced from torch's releases.

PyTorch 2.12.1 Release, bug fix release

This release is meant to fix the following regressions and silent correctness issues:

Regression fixes

  • Fix nondeterministic outputs in test_batch_invariance with FLASH_ATTN on NVIDIA B200 GPUs (#181248), fixed by updating Triton to 3.7.1 (#186814)
  • Fix illegal memory access in the Triton convolution2d_bwd_weight kernel on B100/B200 (sm100) GPUs (#187081), fixed by updating Triton to 3.7.1 (#186814)
  • Fix fill_ on byte-dtype views with misaligned storage offset (#186821)

Releng / Build

  • Drop CPython 3.13t from the binary build matrix (#182951)
Commits

Updates hydra-core from 1.3.2 to 1.3.4

Release notes

Sourced from hydra-core's releases.

Hydra 1.3.4

Security patch release for the 1.3 line.

  • Add a blocklist to hydra.utils.instantiate() for security-sensitive _target_ callables.

Users on Hydra 1.3 should upgrade from hydra-core<=1.3.3 to hydra-core==1.3.4.

Hydra 1.3.3 fixes source builds with modern setuptools by removing the setup.py dependency on pkg_resources. Fixes #3207.

Changelog

Sourced from hydra-core's changelog.

1.3.4 (2026-07-05)

Bug Fixes

  • Add an instantiate target blocklist for security-sensitive callables. (#3259) 1.3.3 (2026-06-11) ==================

Bug Fixes

  • Remove the setup.py dependency on pkg_resources for source builds. (#3207)
Commits

Updates tensorboard from 2.20.0 to 2.21.0

Release notes

Sourced from tensorboard's releases.

TensorBoard 2.21.0

The 2.21 minor series tracks TensorFlow 2.21.

Features

  • Time Series Dashboard Optimization: Improved usability for time-series tooltips by limiting them to a maximum of 5 items and setting the default sorting to "Nearest Pixel" (prioritizing values closest to the cursor) (#7046, #7051, #7133, #7135).

Bug Fixes

  • Fix a Projector plugin vulnerability. (#7115)
  • Dependency Compatibility: Fixed runtime crashes caused by the missing pkg_resources library in newer environments (migrated to standard importlib.metadata) (#7057).

Breaking Changes

  • This version updates its runtime dependency requirements to align with the TensorFlow 2.21 dependency stack. In particular, protobuf now requires >=6.31.1, <8.0.0 and grpcio now requires >=1.74.0, <2.0.
Changelog

Sourced from tensorboard's changelog.

Release 2.21.0

The 2.21 minor series tracks TensorFlow 2.21.

Features

  • Time Series Dashboard Optimization: Improved usability for time-series tooltips by limiting them to a maximum of 5 items and setting the default sorting to "Nearest Pixel" (prioritizing values closest to the cursor) (#7046, #7051).

Bug Fixes

  • Fix a Projector plugin vulnerability. (#7115)
  • Dependency Compatibility: Fixed runtime crashes caused by the missing pkg_resources library in newer environments (migrated to standard importlib.metadata) (#7057).

Breaking Changes

  • This version updates its runtime dependency requirements to align with the TensorFlow 2.21 dependency stack. In particular, protobuf now requires >=6.31.1, <8.0.0 and grpcio now requires >=1.74.0, <2.0.
Commits

Updates pyscf from 2.13.0 to 2.13.1

Release notes

Sourced from pyscf's releases.

PySCF v2.13.1 release

  • Fixes
    • Missing CP2K basis set data in wheel distributions
    • Small-rotor error.
    • Corrected SG1 grid radii handling for ghost atoms.
    • Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.
Changelog

Sourced from pyscf's changelog.

PySCF 2.13.1 (2026-06-01)

  • Fixes
    • Missing CP2K basis set data in wheel distributions
    • Small-rotor error.
    • Corrected SG1 grid radii handling for ghost atoms.
    • Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.
Commits
  • f3754ed Release 2.13.1 (#3232)
  • 6badca8 fix cp2k basis missing bug
  • 9fc6f99 Fix a batch of C-side correctness bugs across pbc, gto, vhf, dft, mcscf, ao2m...
  • f9ecb25 handle stderr on win
  • c744d50 upgrade dispersion (#3209)
  • 60cd902 Correctly fallback to loading ECP from basis-set-exchange
  • db2ec05 Better SG1 radii parameter for ghost atom
  • 45809ec Merge pull request #3205 from fchapoton/details_in_tools
  • 20f12bc a few minor code simplifications and formatting in pyscf/tools
  • 2f85ea3 Merge pull request #3201 from fchapoton/code_detail_in_geom
  • Additional commits viewable in compare view

Updates mypy from 2.1.0 to 2.2.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next Release

Mypy 2.2

We've just uploaded mypy 2.2.0 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance improvements and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

You can read the full documentation for this release on Read the Docs.

Support for Closed TypedDicts (PEP 728)

Mypy now supports closed TypedDicts as specified in PEP 728. A closed TypedDict cannot have extra keys beyond those explicitly defined. This allows the type checker to determine that certain operations are safe when they otherwise wouldn't be due to the potential presence of unknown keys.

You can use the closed keyword argument with TypedDict:

HasName = TypedDict("HasName", {"name": str})
HasOnlyName = TypedDict("HasOnlyName", {"name": str}, closed=True)
Movie = TypedDict("Movie", {"name": str, "year": int})
movie: Movie = {"name": "Nimona", "year": 2023}
has_name: HasName = movie  # OK: HasName is open (default)
has_only_name: HasOnlyName = movie  # Error: HasOnlyName is closed and Movie has extra "year" key

Closed TypedDicts enable more precise type checking because the type checker knows exactly which keys are present. This is particularly useful when working with TypedDict unions or when you want to ensure that a TypedDict conforms to an exact shape.

The closed keyword also enables safe type narrowing with in checks:

Book = TypedDict('Book', {'book': str}, closed=True)
DVD = TypedDict('DVD', {'dvd': str}, closed=True)
type Inventory = Book | DVD
def print_type(inventory: Inventory) -> None:
if "book" in inventory:
# Type is narrowed to Book here - safe because DVD is closed
print(inventory["book"])
else:
# Type is narrowed to DVD here
print(inventory["dvd"])
</tr></table>

... (truncated)

Commits

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

  • #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
  • #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
  • #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
  • #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

  • #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

    If this is undesirable, move the fixture definition to a conftest.py file if possible.

    Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

  • #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

    See 10819 and 14011.

  • #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

    See dynamic-fixture-request-during-teardown for details.

  • #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

    These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

    See parametrize-iterators for details and suggestions.

  • #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

    See config-inicfg for more details.

  • #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits
  • cf470ec Prepare release version 9.1.1
  • e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
  • 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
  • 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
  • b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
  • 9a567e0 [automated] Update plugin list (#14617) (#14618)
  • ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
  • 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
  • 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
  • 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
  • Additional commits viewable in compare view

Updates ruff from 0.15.12 to 0.15.20

Release notes

Sourced from ruff's releases.

0.15.20

Release Notes

Released on 2026-06-25.

Preview features

  • Allow human-readable names in rule selectors (#25887)
  • Emit a warning instead of an error for unknown rule selectors (#26113)
  • Match noqa shebang handling in ruff:ignore comments (#26286)
  • [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

  • Add versioning sections to custom crate READMEs (#26317)
  • Update ruff_python_parser README for crates.io (#26315)
  • [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

Install ruff 0.15.20

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.ps1 | iex"

Download ruff 0.15.20

File Platform Checksum
ruff-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ruff-x86_64-apple-darwin.tar.gz Intel macOS checksum
ruff-aarch64-pc-windows-msvc.zip ARM64 Windows checksum
ruff-i686-pc-windows-msvc.zip x86 Windows checksum
ruff-x86_64-pc-windows-msvc.zip x64 Windows checksum
ruff-aarch64-unknown-linux-gnu.tar.gz ARM64 Linux checksum
ruff-i686-unknown-linux-gnu.tar.gz x86 Linux checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.20

Released on 2026-06-25.

Preview features

  • Allow human-readable names in rule selectors (#25887)
  • Emit a warning instead of an error for unknown rule selectors (#26113)
  • Match noqa shebang handling in ruff:ignore comments (#26286)
  • [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

  • Add versioning sections to custom crate READMEs (#26317)
  • Update ruff_python_parser README for crates.io (#26315)
  • [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

0.15.19

Released on 2026-06-23.

Preview features

  • Support human-readable names when hovering suppression comments and in code actions (#26114)

Bug fixes

  • Fall back to default settings when editor-only settings are invalid (#26244)
  • Fix panic when inserting text at a notebook cell boundary (#26111)

Rule changes

  • [pylint] Update fix suggestions for __floor__, __trunc__, __length_hint__, and __matmul__ variants (PLC2801) (#26239)

Performance

  • Avoid allocating when parsing single string literals (#26200)
  • Avoid reallocating singleton call arguments (#26223)
  • Lazily create source files for lint diagnostics (#26226)
  • Optimize formatter text width and indentation (#26236)
  • Reserve capacity for builtin bindings (#26229)
  • Skip repeated-key checks for singleton dictionaries (#26228)
  • Use ArrayVec for qualified name segments (#26224)

... (truncated)

Commits
  • f82a36b Bump 0.15.20 (#26376)
  • af32943 Improve the summarise-ecosystem-results skill (#26378)
  • 485ebab Remove RUF076 name from schema (#26371)
  • ef81835 [ty] Implement rust-analyzer's "Click for full compiler diagnostic" feature (...
  • 572b31e [ruff] Remove pytest-fixture-autouse (RUF076) (#26240)
  • f703f21 Allow human-readable names in rule selectors (#25887)
  • 0d726b2 [ty] Reuse equality semantics for membership compatibility (#25955)
  • dbe6e98 [ty] Infer definite equality comparison results (#26337)
  • e700ea3 [ty] Prove TypedDict structural patterns exhaustive (#26285)
  • 6a0d2ec [ty] Widen inferred class-valued instance attributes (#26338)
  • Additional commits viewable in compare view

Updates types-pyyaml from 6.0.12.20260510 to 6.0.12.20260518

Commits

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@dependabot
chore(deps): bump the all-dependencies group across 1 directory with …
75a418f 
…11 updates

Bumps the all-dependencies group with 11 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [platformdirs](https://github.com/tox-dev/platformdirs) | `4.9.6` | `4.10.0` |
| [numpy](https://github.com/numpy/numpy) | `2.4.4` | `2.5.1` |
| [scipy](https://github.com/scipy/scipy) | `1.17.1` | `1.18.0` |
| [torch](https://github.com/pytorch/pytorch) | `2.12.0` | `2.12.1` |
| [hydra-core](https://github.com/facebookresearch/hydra) | `1.3.2` | `1.3.4` |
| [tensorboard](https://github.com/tensorflow/tensorboard) | `2.20.0` | `2.21.0` |
| [pyscf](https://github.com/pyscf/pyscf) | `2.13.0` | `2.13.1` |
| [mypy](https://github.com/python/mypy) | `2.1.0` | `2.2.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.0.3` | `9.1.1` |
| [ruff](https://github.com/astral-sh/ruff) | `0.15.12` | `0.15.20` |
| [types-pyyaml](https://github.com/python/typeshed) | `6.0.12.20260510` | `6.0.12.20260518` |



Updates `platformdirs` from 4.9.6 to 4.10.0
- [Release notes](https://github.com/tox-dev/platformdirs/releases)
- [Changelog](https://github.com/tox-dev/platformdirs/blob/main/docs/changelog.rst)
- [Commits](tox-dev/platformdirs@4.9.6...4.10.0)

Updates `numpy` from 2.4.4 to 2.5.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.4.4...v2.5.1)

Updates `scipy` from 1.17.1 to 1.18.0
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.17.1...v1.18.0)

Updates `torch` from 2.12.0 to 2.12.1
- [Release notes](https://github.com/pytorch/pytorch/releases)
- [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md)
- [Commits](pytorch/pytorch@v2.12.0...v2.12.1)

Updates `hydra-core` from 1.3.2 to 1.3.4
- [Release notes](https://github.com/facebookresearch/hydra/releases)
- [Changelog](https://github.com/facebookresearch/hydra/blob/v1.3.4/NEWS.md)
- [Commits](facebookresearch/hydra@v1.3.2...v1.3.4)

Updates `tensorboard` from 2.20.0 to 2.21.0
- [Release notes](https://github.com/tensorflow/tensorboard/releases)
- [Changelog](https://github.com/tensorflow/tensorboard/blob/master/RELEASE.md)
- [Commits](tensorflow/tensorboard@2.20.0...2.21.0)

Updates `pyscf` from 2.13.0 to 2.13.1
- [Release notes](https://github.com/pyscf/pyscf/releases)
- [Changelog](https://github.com/pyscf/pyscf/blob/master/CHANGELOG)
- [Commits](pyscf/pyscf@v2.13.0...v2.13.1)

Updates `mypy` from 2.1.0 to 2.2.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v2.1.0...v2.2.0)

Updates `pytest` from 9.0.3 to 9.1.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.0.3...9.1.1)

Updates `ruff` from 0.15.12 to 0.15.20
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.12...0.15.20)

Updates `types-pyyaml` from 6.0.12.20260510 to 6.0.12.20260518
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: platformdirs
  dependency-version: 4.10.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: numpy
  dependency-version: 2.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: scipy
  dependency-version: 1.18.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: torch
  dependency-version: 2.12.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: hydra-core
  dependency-version: 1.3.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: tensorboard
  dependency-version: 2.21.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: pyscf
  dependency-version: 2.13.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: mypy
  dependency-version: 2.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: pytest
  dependency-version: 9.1.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: ruff
  dependency-version: 0.15.20
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: types-pyyaml
  dependency-version: 6.0.12.20260518
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 8, 2026
@dependabot @github

dependabot Bot commented on behalf of github Jul 15, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Jul 15, 2026
@dependabot
dependabot Bot deleted the dependabot/uv/all-dependencies-804f845608 branch July 15, 2026 15:15
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