Nurse Shortages - #1749

Draft

PempheroM wants to merge 115 commits into

pemphero/nurses_scenario

Commits on Nov 13, 2025

scenario file
PempheroM
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07b12f5
Merge branch 'master' into pemphero/nurses_scenario
thewati
authored
cb095e3

Commits on Nov 20, 2025

changes_yearmode,hr scaling
PempheroM
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6617d49

Commits on Nov 21, 2025

Commits on Nov 27, 2025

added files for improved and worse case scenarios
PempheroM
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7994ed8
Merge remote-tracking branch 'origin/pemphero/nurses_scenario' into pemphero/nurses_scenario
PempheroM
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9cb86db

Commits on Dec 8, 2025

addressing comments
PempheroM
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40406ef

Commits on Dec 9, 2025

.
thewati
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Merge remote-tracking branch 'origin/master'
thewati
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0a95a42

Commits on Dec 28, 2025

Merge remote-tracking branch 'origin/master'
thewati
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6e84902

Commits on Jan 12, 2026

Merge remote-tracking branch 'origin/master'
thewati
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f6cd794

Commits on Jan 19, 2026

Merge remote-tracking branch 'origin/master'
thewati
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660f2a0

Commits on Jan 23, 2026

Merge remote-tracking branch 'origin/master'
thewati
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74e7486

Commits on Jan 27, 2026

Merge remote-tracking branch 'origin/master'
thewati
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e3d3c41

Commits on Feb 3, 2026

Commits on Feb 4, 2026

change start and end years
thewati
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6d2ba99
Merge remote-tracking branch 'origin/master'
thewati
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af3261e
Merge branch 'master' into pemphero/nurses_scenario
thewati
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55f31fd

Commits on Feb 5, 2026

Merge branch 'master' into pemphero/nurses_scenario
tbhallett
authored
b789b7a

Commits on Feb 6, 2026

Merge branch 'master' into pemphero/nurses_scenario
tbhallett
committed
9fa9a29
TH suggestions
tbhallett
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d5def29
linting!
tbhallett
committed
beadfee

Commits on Feb 9, 2026

Merge remote-tracking branch 'origin/master'
thewati
committed
8c0a02d

Commits on Feb 11, 2026

Merge remote-tracking branch 'origin/master'
thewati
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541555d

Commits on Feb 12, 2026

Merge remote-tracking branch 'origin/master'
thewati
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685d91c

Commits on Feb 16, 2026

plots of draws
thewati
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481e2bf
Merge remote-tracking branch 'origin/master'
thewati
committed
f48c011
Merge branch 'master' into pemphero/nurses_scenario
thewati
committed
0687ecc

Commits on Feb 19, 2026

Merge remote-tracking branch 'origin/master'
thewati
committed
29f3a3d

Commits on Feb 20, 2026

Merge branch 'master' into pemphero/nurses_scenario
thewati
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f8a393d
from LFS to Git
thewati
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417503d
Label plots with names and not numbers
thewati
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e7c2568

Commits on Feb 24, 2026

detailed plots
thewati
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0b139b2

Commits on Feb 25, 2026

plots for nurse cadre counts and appointments over time
thewati
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ea79f95
Merge remote-tracking branch 'origin/master'
thewati
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5436c6f

Commits on Mar 11, 2026

Merge remote-tracking branch 'origin/master'
thewati
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f3d65f8
staff num more
thewati
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6b96607

Commits on Mar 12, 2026

Merge remote-tracking branch 'origin/master'
thewati
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7d92e23

Commits on Mar 19, 2026

Merge remote-tracking branch 'origin/master'
thewati
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05aba63

Commits on Mar 30, 2026

Merge remote-tracking branch 'origin/master'
thewati
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dc00df5

Commits on Apr 20, 2026

Merge remote-tracking branch 'origin/master'
thewati
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dfb7ff1
Merge branch 'master' into pemphero/nurses_scenario
thewati
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2aab2a4
update for next run
thewati
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0b7c8a4
comment out unused
thewati
committed
2befeab

Commits on May 4, 2026

Merge remote-tracking branch 'origin/master'
thewati
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d0a8f25
Merge branch 'master' into pemphero/nurses_scenario
thewati
committed
16f8d18

Commits on May 13, 2026

deaths, staff counts and in districts
thewati
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2413c7c

Commits on Jun 4, 2026

dalys and deaths
thewati
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7dac1f3

Commits on Jun 9, 2026

dalys and deaths by causes top 10
thewati
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5987c0a

Commits on Jun 11, 2026

Commits on Jun 18, 2026

update existing resource file names for clarity, as more scenarios to be added
BinglingICL
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re-add the existing resource files after renaming
BinglingICL
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add in resource files for additional scenarios
BinglingICL
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add parameters and the function of HRH scaling by district and officer type
BinglingICL
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add mode parameter in the hs parameter list
BinglingICL
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add more scenarios as designed
BinglingICL
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correct typo
BinglingICL
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read in missing parameter
BinglingICL
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e8a8cab
update district names to be consistent with master facility list
BinglingICL
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dc87136
fix the new hrh scaling function
BinglingICL
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81f1d91
fix the new hrh scaling function
BinglingICL
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fix the referral hospital's district information, to be consistent with master facility list
BinglingICL
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863084b
fix typo
BinglingICL
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local test run all scenarios
BinglingICL
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940101b
small edits to add district info for facilities at level 3+
BinglingICL
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4d59953

Commits on Jun 19, 2026

Add district loggers for deaths and dalys. Next is test file
thewati
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3c49532
fix blank space after Clinical cadre in the resource file
BinglingICL
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7f83607
Fix errors from test file
thewati
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ca5ae91
save staff_counts for local check
BinglingICL
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remove code for local check and keep useful edits
BinglingICL
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recover full run settings
BinglingICL
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d68bb5a
Merge remote-tracking branch 'origin/pemphero/nurses_scenario' into pemphero/nurses_scenario
BinglingICL
committed
b098b3f

Commits on Jun 22, 2026

fix typo in resource file
BinglingICL
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e3424a6

Commits on Jun 23, 2026

district totals must be equal to national totals
thewati
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change long lines
thewati
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0dbb33b
1 scenario, 1 draw
thewati
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b3c122a

Commits on Jul 1, 2026

created new analysis file to verify districts against national
thewati
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739653e

Commits on Jul 3, 2026

Add district_of_residence to data_to_log_for_each_death
thewati
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9ba7e85

Commits on Jul 7, 2026

Test that deaths across districts are equal to national ones
thewati
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All scenarios with 10 runs
thewati
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Commits on Jul 16, 2026

compare deaths and dalys across districts to national
thewati
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3df663f

Commits on Jul 20, 2026

Plot default and improved healthsystem maps
thewati
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Add deaths default map
thewati
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61dbf18

Commits on Jul 22, 2026

plot dalys and deaths district level
thewati
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fb007ec

Commits on Jul 24, 2026

analyse service volumes
thewati
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37651d6
dalys and deaths re-worked
thewati
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8e0cffe
remove prints
thewati
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f3dae66
update service volumes
thewati
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66ef7c7

Commits on Jul 29, 2026

district nurse counts excel
thewati
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7462010
district nurse counts excel with deaths and dalys
thewati
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80cde32

Commits on Jul 31, 2026

add validation and use run by run
thewati
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655b138

Commits on Aug 3, 2026

reverse colormaps
thewati
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22ac3f9

Commits on Aug 6, 2026

proper naming
thewati
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2b136c9

Commits on Aug 7, 2026

bar charts for district level death/daly percent averted
thewati
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e5d043b

Commits on Aug 11, 2026

service changes by cause
thewati
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2a8ce1f

Commits on Aug 17, 2026

scale up plot data with referrals and HQ
thewati
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77c193b

Commits on Aug 19, 2026

excel file with dalys and deaths again
thewati
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da4be36
thickness and transparency
thewati
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f427fd6
formatting
thewati
committed
131be0b

Commits on Sep 1, 2026

combining Likoma and Nkhata Bay
thewati
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1771fc8

Commits on Sep 2, 2026

changes in total service volumes 2027 to 2034, instead of yearly
thewati
committed
7de86d9

Commits on Sep 3, 2026

percent change in service vol by area as compared to baseline
thewati
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staff scaleup all default
thewati
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86e9969
switch scenarios for maps
thewati
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0900caa

Commits on Sep 11, 2026

nurse time use plots
thewati
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