Version 1.0 Final

Instructions:

• Download DART-N.jar
• Run DART-N.jar
• From the top menu select:
  • File -> Load genome sequence and select a .gfa file
  • OR File -> Load phylogenetic tree and select a .nwk file
  • Annotations can be loaded separately via: File -> Load annotation data and select a .gff file, or via the pop up asking for annotations. Please note, this popup can also be closed.

For further instructions, you can read the read me.

Please note, use of a mouse is recommended.
Please note, the tree, graph, meta data and annotation data files should be loaded before being able to use the program properly!

SE_Deliverables_17-06-2016

Added updated retrospective 8

V0.8-Deliverable

Release notes:

• Added scrolling in phylogenetic tree
• Removed some minor bugs

Instructions:

• Download DART-N-0.8.jar
• Run DART-N-0.8.jar
• From the top menu select:
  • File -> Load genome sequence and select a .gfa file
  • OR File -> Load phylogenetic tree and select a .nwk file
  • Annotations must be loaded separately via: File -> Load annotation data and select a .gff file

Please note, use of a mouse is recommended.
Please note, the tree, graph, meta data and annotation data files should be loaded before being able to use the program properly!

V0.7-Deliverable

Release notes:

• Added scrolling in phylogenetic tree
• Removed some minor bugs

Instructions:

• Download DART-N-0.7.jar
• Run DART-N-0.7.jar
• From the top menu select:
  • File -> Load genome sequence and select a .gfa file
  • File -> Load phylogenetic tree and select a .nwk file
  • File -> Load Meta Data tree and select a .xlsx file
  • File -> Load Annotation Data tree and select a .gff file

Please note, use of a mouse is recommended.
Please note, the tree, graph, meta data and annotation data files should be loaded before being able to use the program properly!

V0.6.2-Presentation

Release notes:

• Added scrolling in phylogenetic tree
• Removed some minor bugs

Instructions:

• Download V0.6.2-Including_resources.zip
• Extract V0.6.2-Including_resources.zip
• Execute DART-N-0.6.2.jar
• From the top menu select:
  • File -> Load genome sequence and select a .gfa file (some included in zip file)
  • File -> Load phylogenetic tree and select a .nwk file (one included in zip file)

Please note, use of a mouse is recommended.
Please note, both the tree and graph file should be loaded before being able to use the program properly!

V0.6.1 for Gustavo

Release notes:

• Added scrolling in phylogenetic tree
• Removed some minor bugs

Instructions:

• Download V0.6.1-Including_resources.zip
• Extract V0.6.1-Including_resources.zip
• Execute DART-N-0.6.1.jar
• From the top menu select:
  • File -> Load genome sequence and select a .gfa file (some included in zip file)
  • File -> Load phylogenetic tree and select a .nwk file (one included in zip file)

Please note, both the tree and graph file should be loaded before being able to use the program properly!

V0.6-Deliverable

NOTE: Both a .gfa and a .nwk file must be loaded when using the app:
- File: load genome sequence
- File: load phylogenetic tree

SE_Deliverables_(03-06-2016)

Deliverables include:

Sprint plan for iteration 7
Restrospective of iteration 6

V0.5.1-Deliverable

Introducing:

• Phylogenetic tree interaction
• Phylogenetic tree feature enhancement
• Node collapsing
• Enhanced node placement

Also fixed numerous bugs.

SE_Deliverables_(27-05-2016)

Deliverables include:

• Sprint plan for iteration 6
• Restrospective of iteration 5