Computational Mass Spectrometry @ Pacific Northwest National Laboratory
- 105 followers
- Richland, WA
- https://omics.pnl.gov/software/
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Thermo-Raw-File-Reader
Thermo-Raw-File-Reader Public.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
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Informed-Proteomics
Informed-Proteomics PublicTop down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
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DeconTools
DeconTools PublicUsed to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.
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DB-Schema-Export-Tool
DB-Schema-Export-Tool PublicExports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…
Repositories
- RomicsProcessor Public
R package that provides a structured R object to store and analyze omics data
PNNL-Comp-Mass-Spec/RomicsProcessor’s past year of commit activity - PHRP Public
Converts a MS-GF+ .tsv search result file or an X!Tandem results file (XML format) into a series of tab-delimited text files, summarizing the results. It also supports results files from MaxQuant, MSAlign, TopPIC, MODa, MODPlus, and MSPathFinder, along with SEQUEST Synopsis/First Hits files.
PNNL-Comp-Mass-Spec/PHRP’s past year of commit activity - DB-Schema-Export-Tool Public
Exports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles and logins. The program can also export table data to create SQL files with an Insert Into statement for each row.
PNNL-Comp-Mass-Spec/DB-Schema-Export-Tool’s past year of commit activity - PNNL.DIA.utils Public
**WORK IN PROGRESS** misc. functions for DIA proteomics data analysis and parsing to MSnSet objects
PNNL-Comp-Mass-Spec/PNNL.DIA.utils’s past year of commit activity - Proteowizard-Wrapper Public
C# classes that can be used to interface with the ProteoWizard libraries
PNNL-Comp-Mass-Spec/Proteowizard-Wrapper’s past year of commit activity
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