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Hide antibody hit selection #193

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2 changes: 2 additions & 0 deletions source/walkthroughs/antibody-hit-selection-ngs.rst
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:orphan:

============================================
Antibody hit selection from NGS data
============================================
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3 changes: 0 additions & 3 deletions source/walkthroughs/index.rst
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Expand Up @@ -15,8 +15,6 @@ Web App
- Tools covered
* - `Lead optimization of monoclonal antibody to meet target product profile <./antibody-engineering.rst>`_
- Optimization and Prediction Models
* - `Antibody hit selection from NGS data <./antibody-hit-selection-ngs.rst>`_
- Optimization and Prediction Models
* - `Finding mutational hotspots and designing one-shot variant libraries <./enzyme-engineering.rst>`_
- PoET, Structure Prediction
* - `Designing libraries of multimeric proteins <./multichain.rst>`_
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:maxdepth: 2

Lead optimization of monoclonal antibody to meet target product profile <antibody-engineering>
Antibody hit selection from NGS data <antibody-hit-selection-ngs>
Finding mutational hotspots and designing one-shot variant libraries <enzyme-engineering>
Predicting the fitness of isomerases without experimental data <./predicting-fitness.ipynb>
Understanding the impact of substitution and deletions on aliphatic amidase using different large language models <./AMIE_substitution_deletion_analysis_poet.ipynb>
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8 changes: 0 additions & 8 deletions source/web-app/opmodels/dataset-assay-tools.rst
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Expand Up @@ -8,9 +8,6 @@ sequences in an uploaded assay dataset. It brings together four tools:
**Antibody settings panel** that appears automatically on antibody datasets.
This page describes what each tool does and how to use it.

For an end-to-end walkthrough that combines these tools to select hits from an NGS antibody library, see
:doc:`/walkthroughs/antibody-hit-selection-ngs`.

.. figure:: /_static/opmodels/dataset-assay/dataset-assay-overview.png
:alt: Dataset Assay Details page overview, showing tabs, header chips, and action bar

Expand Down Expand Up @@ -303,8 +300,3 @@ chains.
Heavy+Kappa rows and some Heavy+Lambda rows, with mismatched/missing chain
detection is flagged in the table with a warning style — useful as a
first-pass quality check on the NGS pipeline output.

.. seealso::

:doc:`/walkthroughs/antibody-hit-selection-ngs` — recommended end-to-end
flow that uses these features to select antibody hits from an NGS library.
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