Docs: Sphinx → properdocs migration + descending-drive Poisson fix (+ Optuna parallelization) - #19

Merged

RaulSimpetru merged 61 commits into

mainfrom

feat/puffer-api

Jul 16, 2026

Commits on Jun 23, 2026

docs: add pufferlib-inspired API redesign proposal
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docs: add kernel-core implementation plan
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feat(kernel): add SimState shared buffer
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refactor(kernel): annotate SimState.alloc dtype and return type
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feat(kernel): add Stage and Backend protocols
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feat(kernel): add Simulation lockstep driver
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test(kernel): lock one-tick feedback and on_step semantics
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feat(kernel): add SimResult buffer-first snapshot; run() returns it
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fix(kernel): SimResult.from_state copies force/EMG buffers (true snapshot)
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feat(kernel): add lazy to_neo/to_nwb adapters to SimResult
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test(kernel): prove backend seam and hot-path import discipline
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docs(kernel): document SimResult.from_state conventions and numpy boundary
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fix(kernel): cover spike-only to_neo t_stop and make setup idempotent
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perf(examples): parallelize watanabe DC-offset Optuna across worker processes
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build: declare h5py in the nwb extra
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docs: add mkdocs/properdocs migration design proposal
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docs: add mkdocs/properdocs migration implementation plan
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build(docs): swap Sphinx stack for properdocs + mkdocs-gallery
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docs: add properdocs.yml skeleton with material theme + home page
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docs: add mkdocstrings API reference pages
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docs: migrate home, getting-started, and neo-blocks prose to markdown
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docs: add executed example gallery via mkdocs-gallery
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ci(docs): build + deploy properdocs site to GitHub Pages; drop sphinx workflow
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docs(gallery): default to source-only rendering (no execution)
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docs: remove Sphinx scaffolding after properdocs migration
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docs: restore API symbols + landing content dropped in migration
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docs: home shows the logo only, drop the redundant MyoGen title
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Commits on Jul 11, 2026

fix(neuron): make the descending-drive Poisson generator a true Poisson process
RaulSimpetru
committed

Commits on Jul 12, 2026