feat: Flocking Boids demo

.git-local-sandbox/COMMIT_EDITMSG

@@ -0,0 +1 @@
+feat: Flocking Boids demo - pure NetLogo boids simulation

.git-local-sandbox/FETCH_HEAD

@@ -0,0 +1 @@
+2ab185f3b7af2f296580372572db1aa08d20eaf6		branch 'main' of https://github.com/JNK234/Netlogo-LLM-Extension

.git-local-sandbox/HEAD

@@ -0,0 +1 @@
+ref: refs/heads/feature/flocking-boids

.git-local-sandbox/ORIG_HEAD

@@ -0,0 +1 @@
+402708bd9b98bc7ab443b1440f213a462ea96b83

.git-local-sandbox/config

@@ -0,0 +1,63 @@
+[core]
+	repositoryformatversion = 0
+	filemode = true
+	bare = false
+	logallrefupdates = true
+	ignorecase = true
+	precomposeunicode = true
+	hooksPath = /dev/null
+[remote "llm"]
+	url = https://github.com/JNK234/Netlogo-LLM-Extension.git
+	fetch = +refs/heads/*:refs/remotes/llm/*
+[pull]
+	rebase = false
+[branch "main"]
+	remote = llm
+	merge = refs/heads/main
+[remote "thebizzle"]
+	url = https://github.com/TheBizzle/LLM-Extension.git
+	fetch = +refs/heads/*:refs/remotes/thebizzle/*
+[branch "pr-1-with-path-fix"]
+	remote = thebizzle
+	merge = refs/heads/main
+	vscode-merge-base = thebizzle/main
+	vscode-merge-base = thebizzle/main
+[branch "local-treasure-hunt"]
+	remote = llm
+	merge = refs/heads/claude/treasure-hunt-llm-agents-011CUWkpMWAkoBPBVG1Ut2mn
+	vscode-merge-base = llm/claude/treasure-hunt-llm-agents-011CUWkpMWAkoBPBVG1Ut2mn
+	vscode-merge-base = llm/claude/treasure-hunt-llm-agents-011CUWkpMWAkoBPBVG1Ut2mn
+[branch "config-update"]
+	vscode-merge-base = llm/claude/treasure-hunt-llm-agents-011CUWkpMWAkoBPBVG1Ut2mn
+	remote = llm
+	merge = refs/heads/config-update
+[branch "config-update-clean"]
+	vscode-merge-base = llm/main
+[branch "config-validation-only"]
+	remote = llm
+	merge = refs/heads/config-validation-only
+[branch "treasure-hunt-improvements"]
+	remote = llm
+	merge = refs/heads/treasure-hunt-improvements
+	vscode-merge-base = llm/config-validation-only
+[branch "refactor/issue-6-code-review"]
+	vscode-merge-base = llm/config-update
+	remote = llm
+	merge = refs/heads/refactor/issue-6-code-review
+[user]
+	name = JNK234
+	email = jwalapuramnarasimha@gmail.com
+[remote "origin"]
+	url = https://github.com/JNK234/Netlogo-LLM-Extension.git
+	fetch = +refs/heads/*:refs/remotes/origin/*
+[branch "feature/epiplexity-01-full-context"]
+	remote = origin
+	merge = refs/heads/feature/epiplexity-01-full-context
+[branch "feature/epiplexity-02-full-context"]
+	remote = origin
+	merge = refs/heads/feature/epiplexity-02-full-context
+[commit]
+	gpgsign = false
+[branch "feature/flocking-boids"]
+	remote = origin
+	merge = refs/heads/feature/flocking-boids

.git-local-sandbox/description

@@ -0,0 +1 @@
+Unnamed repository; edit this file 'description' to name the repository.

.git-local-sandbox/filter-repo/already_ran

@@ -0,0 +1,3 @@
+This file exists to allow you to filter again without --force,
+and to specify that metadata files should be updated instead
+of rewritten

.git-local-sandbox/filter-repo/changed-refs

@@ -0,0 +1 @@
+refs/heads/main

.git-local-sandbox/filter-repo/commit-map

@@ -0,0 +1,57 @@
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+db9bc60ee5ba71a978aede09108e3e7a846ae4c6 80dbcb5b5bf714407636168bb8a53292b017e9be
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+f09f4dab50887e8e4054a32098fbd4fa36dbd8c7 1cb75bcf7373f70888f2baceea58d5c0e49df7f1

.git-local-sandbox/filter-repo/first-changed-commits

@@ -0,0 +1 @@
+75abde1327b8b8e17c5e1f7dbd9db45addbd2b8d 7a6419fd03bfb1e36d082f3d1ec088d3bd7518b6

.git-local-sandbox/filter-repo/ref-map

@@ -0,0 +1,2 @@
+old                                      new                                      ref
+ebcd219bcdd1ce7edcc7621d5933793ea0fa04b1 b654ab0666a9e0f9f89a410bc8938a0b10eae2e0 refs/heads/main

.git-local-sandbox/filter-repo/suboptimal-issues

@@ -0,0 +1,5 @@
+The following commits were filtered out, but referenced in another
+commit message.  The reference to the now-nonexistent commit hash
+(or a substring thereof) was left as-is in any commit messages:
+  b'20241022'
+

.git-local-sandbox/hooks/applypatch-msg.sample

@@ -0,0 +1,15 @@
+#!/bin/sh
+#
+# An example hook script to check the commit log message taken by
+# applypatch from an e-mail message.
+#
+# The hook should exit with non-zero status after issuing an
+# appropriate message if it wants to stop the commit.  The hook is
+# allowed to edit the commit message file.
+#
+# To enable this hook, rename this file to "applypatch-msg".
+
+. git-sh-setup
+commitmsg="$(git rev-parse --git-path hooks/commit-msg)"
+test -x "$commitmsg" && exec "$commitmsg" ${1+"$@"}
+:

.git-local-sandbox/hooks/commit-msg.sample

@@ -0,0 +1,24 @@
+#!/bin/sh
+#
+# An example hook script to check the commit log message.
+# Called by "git commit" with one argument, the name of the file
+# that has the commit message.  The hook should exit with non-zero
+# status after issuing an appropriate message if it wants to stop the
+# commit.  The hook is allowed to edit the commit message file.
+#
+# To enable this hook, rename this file to "commit-msg".
+
+# Uncomment the below to add a Signed-off-by line to the message.
+# Doing this in a hook is a bad idea in general, but the prepare-commit-msg
+# hook is more suited to it.
+#
+# SOB=$(git var GIT_AUTHOR_IDENT | sed -n 's/^\(.*>\).*$/Signed-off-by: \1/p')
+# grep -qs "^$SOB" "$1" || echo "$SOB" >> "$1"
+
+# This example catches duplicate Signed-off-by lines.
+
+test "" = "$(grep '^Signed-off-by: ' "$1" |
+	 sort | uniq -c | sed -e '/^[ 	]*1[ 	]/d')" || {
+	echo >&2 Duplicate Signed-off-by lines.
+	exit 1
+}

.git-local-sandbox/hooks/fsmonitor-watchman.sample

@@ -0,0 +1,174 @@
+#!/usr/bin/perl
+
+use strict;
+use warnings;
+use IPC::Open2;
+
+# An example hook script to integrate Watchman
+# (https://facebook.github.io/watchman/) with git to speed up detecting
+# new and modified files.
+#
+# The hook is passed a version (currently 2) and last update token
+# formatted as a string and outputs to stdout a new update token and
+# all files that have been modified since the update token. Paths must
+# be relative to the root of the working tree and separated by a single NUL.
+#
+# To enable this hook, rename this file to "query-watchman" and set
+# 'git config core.fsmonitor .git/hooks/query-watchman'
+#
+my ($version, $last_update_token) = @ARGV;
+
+# Uncomment for debugging
+# print STDERR "$0 $version $last_update_token\n";
+
+# Check the hook interface version
+if ($version ne 2) {
+	die "Unsupported query-fsmonitor hook version '$version'.\n" .
+	    "Falling back to scanning...\n";
+}
+
+my $git_work_tree = get_working_dir();
+
+my $retry = 1;
+
+my $json_pkg;
+eval {
+	require JSON::XS;
+	$json_pkg = "JSON::XS";
+	1;
+} or do {
+	require JSON::PP;
+	$json_pkg = "JSON::PP";
+};
+
+launch_watchman();
+
+sub launch_watchman {
+	my $o = watchman_query();
+	if (is_work_tree_watched($o)) {
+		output_result($o->{clock}, @{$o->{files}});
+	}
+}
+
+sub output_result {
+	my ($clockid, @files) = @_;
+
+	# Uncomment for debugging watchman output
+	# open (my $fh, ">", ".git/watchman-output.out");
+	# binmode $fh, ":utf8";
+	# print $fh "$clockid\n@files\n";
+	# close $fh;
+
+	binmode STDOUT, ":utf8";
+	print $clockid;
+	print "\0";
+	local $, = "\0";
+	print @files;
+}
+
+sub watchman_clock {
+	my $response = qx/watchman clock "$git_work_tree"/;
+	die "Failed to get clock id on '$git_work_tree'.\n" .
+		"Falling back to scanning...\n" if $? != 0;
+
+	return $json_pkg->new->utf8->decode($response);
+}
+
+sub watchman_query {
+	my $pid = open2(\*CHLD_OUT, \*CHLD_IN, 'watchman -j --no-pretty')
+	or die "open2() failed: $!\n" .
+	"Falling back to scanning...\n";
+
+	# In the query expression below we're asking for names of files that
+	# changed since $last_update_token but not from the .git folder.
+	#
+	# To accomplish this, we're using the "since" generator to use the
+	# recency index to select candidate nodes and "fields" to limit the
+	# output to file names only. Then we're using the "expression" term to
+	# further constrain the results.
+	my $last_update_line = "";
+	if (substr($last_update_token, 0, 1) eq "c") {
+		$last_update_token = "\"$last_update_token\"";
+		$last_update_line = qq[\n"since": $last_update_token,];
+	}
+	my $query = <<"	END";
+		["query", "$git_work_tree", {$last_update_line
+			"fields": ["name"],
+			"expression": ["not", ["dirname", ".git"]]
+		}]
+	END
+
+	# Uncomment for debugging the watchman query
+	# open (my $fh, ">", ".git/watchman-query.json");
+	# print $fh $query;
+	# close $fh;
+
+	print CHLD_IN $query;
+	close CHLD_IN;
+	my $response = do {local $/; <CHLD_OUT>};
+
+	# Uncomment for debugging the watch response
+	# open ($fh, ">", ".git/watchman-response.json");
+	# print $fh $response;
+	# close $fh;
+
+	die "Watchman: command returned no output.\n" .
+	"Falling back to scanning...\n" if $response eq "";
+	die "Watchman: command returned invalid output: $response\n" .
+	"Falling back to scanning...\n" unless $response =~ /^\{/;
+
+	return $json_pkg->new->utf8->decode($response);
+}
+
+sub is_work_tree_watched {
+	my ($output) = @_;
+	my $error = $output->{error};
+	if ($retry > 0 and $error and $error =~ m/unable to resolve root .* directory (.*) is not watched/) {
+		$retry--;
+		my $response = qx/watchman watch "$git_work_tree"/;
+		die "Failed to make watchman watch '$git_work_tree'.\n" .
+		    "Falling back to scanning...\n" if $? != 0;
+		$output = $json_pkg->new->utf8->decode($response);
+		$error = $output->{error};
+		die "Watchman: $error.\n" .
+		"Falling back to scanning...\n" if $error;
+
+		# Uncomment for debugging watchman output
+		# open (my $fh, ">", ".git/watchman-output.out");
+		# close $fh;
+
+		# Watchman will always return all files on the first query so
+		# return the fast "everything is dirty" flag to git and do the
+		# Watchman query just to get it over with now so we won't pay
+		# the cost in git to look up each individual file.
+		my $o = watchman_clock();
+		$error = $output->{error};
+
+		die "Watchman: $error.\n" .
+		"Falling back to scanning...\n" if $error;
+
+		output_result($o->{clock}, ("/"));
+		$last_update_token = $o->{clock};
+
+		eval { launch_watchman() };
+		return 0;
+	}
+
+	die "Watchman: $error.\n" .
+	"Falling back to scanning...\n" if $error;
+
+	return 1;
+}
+
+sub get_working_dir {
+	my $working_dir;
+	if ($^O =~ 'msys' || $^O =~ 'cygwin') {
+		$working_dir = Win32::GetCwd();
+		$working_dir =~ tr/\\/\//;
+	} else {
+		require Cwd;
+		$working_dir = Cwd::cwd();
+	}
+
+	return $working_dir;
+}

.git-local-sandbox/hooks/post-update.sample

@@ -0,0 +1,8 @@
+#!/bin/sh
+#
+# An example hook script to prepare a packed repository for use over
+# dumb transports.
+#
+# To enable this hook, rename this file to "post-update".
+
+exec git update-server-info

.git-local-sandbox/hooks/pre-applypatch.sample

@@ -0,0 +1,14 @@
+#!/bin/sh
+#
+# An example hook script to verify what is about to be committed
+# by applypatch from an e-mail message.
+#
+# The hook should exit with non-zero status after issuing an
+# appropriate message if it wants to stop the commit.
+#
+# To enable this hook, rename this file to "pre-applypatch".
+
+. git-sh-setup
+precommit="$(git rev-parse --git-path hooks/pre-commit)"
+test -x "$precommit" && exec "$precommit" ${1+"$@"}
+: