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Philosopher 'filter' crashes with 'fatal error: runtime: out of memory' on large metaproteomic database (2.5M proteins, 83 mzML files)

Status: Open.

#565 In Nesvilab/philosopher;

· xbaanix opened on Jul 29, 2026

Unable to compile Philosopher : undefined: Asset

Status: Open.

#564 In Nesvilab/philosopher;

· jmk-3bio opened on Jul 22, 2026

PhilosopherFilter crash - error parsing file

Status: Open.

#563 In Nesvilab/philosopher;

· EllenBoswell opened on Apr 21, 2026

"Error: peptide [x] was assigned to [protein y] that is not the database"

Status: Open.

#558 In Nesvilab/philosopher;

· a-indra opened on Feb 6, 2026

Spectral library generation using FragPipe 23.1: Process 'PhilosopherFilter' finished, exit code: 137

Status: Open.

#557 In Nesvilab/philosopher;

· andrewyy677 opened on Jan 25, 2026

Missing libz so file

Status: Open.

#554 In Nesvilab/philosopher;

· bernt-matthias opened on Dec 17, 2025

Philosopher filter: time="11:59:11" level=error msg="Cannot read file. Error parsing the file "

Status: Open.

#552 In Nesvilab/philosopher;

· rjvortega opened on Dec 10, 2025

Cannot read file. Error parsing, exit code: 1

Status: Open.

#547 In Nesvilab/philosopher;

· winnieWei123456 opened on Oct 27, 2025

Where is the output database?

Status: Open.

#545 In Nesvilab/philosopher;

· thh32 opened on Oct 13, 2025

PhilosopherFilter error

Status: Open.

#544 In Nesvilab/philosopher;

· jongminchoi opened on Oct 10, 2025

variation in open-search results

Status: Open.

#542 In Nesvilab/philosopher;

· animesh opened on Sep 2, 2025

The execution of the Philosopher was unexpectedly stuck.

Status: Open.

#541 In Nesvilab/philosopher;

· huangcx1539 opened on Aug 30, 2025