Rework

main.py

@@ -1,6 +1,29 @@
-def main():
-    print("Hello from graph-benchmarks!")
+import logging
+
+import typer
+from rich.logging import RichHandler
+
+from src.download import app as download_app
+from src.prepare_matrices import app as prepare_matrices_app
+from src.benchmark import app as benchmark_app
+
+app = typer.Typer(no_args_is_help=True)
+app.add_typer(download_app)
+app.add_typer(prepare_matrices_app)
+app.add_typer(benchmark_app, name="benchmark")
+
+log_file_handler = logging.FileHandler("log.txt")
+
+FORMAT = "%(message)s"
+logging.basicConfig(
+    level="NOTSET",
+    format=FORMAT,
+    datefmt="[%X]",
+    handlers=[RichHandler(), log_file_handler],
+)
+
+log = logging.getLogger("rich")
 
 
 if __name__ == "__main__":
-    main()
+    app()

matrices.yaml

@@ -50,8 +50,8 @@
     - fsharp
   reorder: true
   link: https://suitesparse-collection-website.herokuapp.com/MM/DIMACS10/coAuthorsCiteseer.tar.gz
-# SSSP - find 50K vertices matrix and test (Andrews_positive.mtx)
-- name: Andrews_positive
+# SSSP - find 50K vertices matrix and test (Andrews.mtx)
+- name: Andrews
   enabled: true
   algorithm: sssp
   tools:
@@ -60,8 +60,8 @@
     - lagraph
     - fsharp
   reorder: false
-  link: https://sparse.tamu.edu/Andrews/Andrews
-- name: Andrews_positive
+  link: https://suitesparse-collection-website.herokuapp.com/MM/Andrews/Andrews.tar.gz
+- name: Andrews
   enabled: true
   algorithm: sssp
   tools:
@@ -70,7 +70,7 @@
     - lagraph
     - fsharp
   reorder: true
-  link: https://sparse.tamu.edu/Andrews/Andrews
+  link: https://suitesparse-collection-website.herokuapp.com/MM/Andrews/Andrews.tar.gz
 # TC - only small matrices
 # Small matrices ==> every algorithm for vine comparison
 - name: gr_30_30
@@ -83,7 +83,7 @@
     - fsharp
     - vine
   reorder: false
-  link: https://sparse.tamu.edu/HB/gr_30_30
+  link: https://suitesparse-collection-website.herokuapp.com/MM/HB/gr_30_30.tar.gz
 - name: gr_30_30
   enabled: true
   algorithm: bfs
@@ -94,7 +94,7 @@
     - fsharp
     - vine
   reorder: true
-  link: https://sparse.tamu.edu/HB/gr_30_30
+  link: https://suitesparse-collection-website.herokuapp.com/MM/HB/gr_30_30.tar.gz
 - name: Trefethen_2000
   enabled: true
   algorithm: bfs
@@ -105,7 +105,7 @@
     - fsharp
     - vine
   reorder: false
-  link: https://sparse.tamu.edu/JGD_Trefethen/Trefethen_2000
+  link: https://suitesparse-collection-website.herokuapp.com/MM/JGD_Trefethen/Trefethen_2000.tar.gz
 - name: Trefethen_2000
   enabled: true
   algorithm: bfs
@@ -116,7 +116,7 @@
     - fsharp
     - vine
   reorder: true
-  link: https://sparse.tamu.edu/JGD_Trefethen/Trefethen_2000
+  link: https://suitesparse-collection-website.herokuapp.com/MM/JGD_Trefethen/Trefethen_2000.tar.gz
 - name: gr_30_30
   enabled: true
   algorithm: sssp
@@ -127,7 +127,7 @@
     - fsharp
     - vine
   reorder: false
-  link: https://sparse.tamu.edu/HB/gr_30_30
+  link: https://suitesparse-collection-website.herokuapp.com/MM/HB/gr_30_30.tar.gz
 - name: gr_30_30
   enabled: true
   algorithm: sssp
@@ -138,7 +138,7 @@
     - fsharp
     - vine
   reorder: true
-  link: https://sparse.tamu.edu/HB/gr_30_30
+  link: https://suitesparse-collection-website.herokuapp.com/MM/HB/gr_30_30.tar.gz
 - name: Trefethen_2000
   enabled: true
   algorithm: sssp
@@ -149,7 +149,7 @@
     - fsharp
     - vine
   reorder: false
-  link: https://sparse.tamu.edu/JGD_Trefethen/Trefethen_2000
+  link: https://suitesparse-collection-website.herokuapp.com/MM/JGD_Trefethen/Trefethen_2000.tar.gz
 - name: Trefethen_2000
   enabled: true
   algorithm: sssp
@@ -160,7 +160,7 @@
     - fsharp
     - vine
   reorder: true
-  link: https://sparse.tamu.edu/JGD_Trefethen/Trefethen_2000
+  link: https://suitesparse-collection-website.herokuapp.com/MM/JGD_Trefethen/Trefethen_2000.tar.gz
 - name: gr_30_30
   enabled: true
   algorithm: tc
@@ -171,7 +171,7 @@
     - fsharp
     - vine
   reorder: false
-  link: https://sparse.tamu.edu/HB/gr_30_30
+  link: https://suitesparse-collection-website.herokuapp.com/MM/HB/gr_30_30.tar.gz
 - name: gr_30_30
   enabled: true
   algorithm: tc
@@ -182,7 +182,7 @@
     - fsharp
     - vine
   reorder: true
-  link: https://sparse.tamu.edu/HB/gr_30_30
+  link: https://suitesparse-collection-website.herokuapp.com/MM/HB/gr_30_30.tar.gz
 - name: Trefethen_2000
   enabled: true
   algorithm: tc
@@ -192,6 +192,5 @@
     - lagraph
     - fsharp
   reorder: false
-  link: https://sparse.tamu.edu/JGD_Trefethen/Trefethen_2000
-
+  link: https://suitesparse-collection-website.herokuapp.com/MM/JGD_Trefethen/Trefethen_2000.tar.gz
 # Trefethen_2000 is not reordered for tc because it makes everything much worse

pyproject.toml

@@ -5,11 +5,14 @@ description = "Add your description here"
 readme = "README.md"
 requires-python = ">=3.13"
 dependencies = [
+    "dataclass-wizard[yaml]>=0.39.1",
     "ipykernel>=7.2.0",
     "matplotlib>=3.10.8",
     "pandas>=3.0.2",
     "pyyaml>=6.0.3",
     "requests[socks]>=2.33.1",
     "scipy>=1.17.1",
+    "scipy-stubs>=1.18.0.0",
+    "toolz>=1.1.0",
     "typer>=0.24.1",
 ]