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feat: Use PMcore 0.26 #362

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Merged
mnneely merged 16 commits into from
Jul 22, 2026
Merged

feat: Use PMcore 0.26 #362

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35886c3
feat: Use PMcore 0.26
mhovd Jul 13, 2026
a25ead7
WIP
mhovd Jul 13, 2026
a297a22
WIP
mhovd Jul 13, 2026
f8fc530
Fix tests
mhovd Jul 13, 2026
5b340a9
Use published version of PMcore
mhovd Jul 13, 2026
ccd819e
wip: bump Description version to 3.2
mnneely Jul 13, 2026
22796f9
feat: Use a custom memory allocator
mhovd Jul 14, 2026
becfb9f
Fix DSL model execution
Siel Jul 20, 2026
efc31a3
Update PMcore to 0.26.1
Siel Jul 20, 2026
55f6dc2
Documentation update
mhovd Jul 20, 2026
4eaedfd
fix: sim with split, covariates and limits
mnneely Jul 20, 2026
b5f5848
Add PM_model DSL factory
Siel Jul 21, 2026
8c61ac9
devtools::document()
mhovd Jul 22, 2026
2096859
Fix failing tests
mhovd Jul 22, 2026
d27d9f7
ci: preload libgomp for pkgdown build job
Copilot Jul 22, 2026
c8edfba
fix: addressing build errors
mnneely Jul 22, 2026
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677 changes: 501 additions & 176 deletions Cargo.lock
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4 changes: 1 addition & 3 deletions Cargo.toml
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Original file line number Diff line number Diff line change
@@ -1,9 +1,7 @@
[workspace]
resolver = "2"

members = [
"src/rust",
]
members = ["src/rust"]

exclude = [
"inst/template",
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5 changes: 2 additions & 3 deletions DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
Type: Package
Package: Pmetrics
Title: Pmetrics for Population Modeling and Simulation
Version: 3.1.5
Version: 3.2
Authors@R: c(
person("Michael", "Neely", , "mneely@usc.edu", role = c("aut", "cre")),
person("Julián", "Otálvaro", , "juliandavid347@gmail.com", role = "aut"),
Expand Down Expand Up @@ -80,12 +80,11 @@ Suggests:
VignetteBuilder:
knitr
Config/Needs/website: r-lib/pkgdown, quarto
Config/rextendr/version: 0.4.2
Config/rextendr/version: 0.5.0
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
SystemRequirements: Cargo (>= 1.82) (Rust's package manager), rustc
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4 changes: 0 additions & 4 deletions NAMESPACE
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Expand Up @@ -102,11 +102,9 @@ export(clear_build)
export(cli_ask)
export(cli_df)
export(click_plot)
export(compile_model)
export(cor2cov)
export(create_pmetrics_project)
export(downloadR)
export(dummy_compile)
export(export_plotly)
Comment on lines 102 to 108
export(fit)
export(getCov)
Expand All @@ -115,7 +113,6 @@ export(getFixedColNum)
export(getPMoptions)
export(getPalettes)
export(interp)
export(is_cargo_installed)
export(latestR)
export(lit_sim)
export(makeAUC)
Expand Down Expand Up @@ -151,7 +148,6 @@ export(simulate_one)
export(ss.PK)
export(sub_plot)
export(template)
export(temporary_path)
export(three_comp_bolus)
export(three_comp_bolus_cl)
export(three_comp_iv)
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4 changes: 2 additions & 2 deletions R/Deprecated.R
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Expand Up @@ -241,13 +241,13 @@ make_valid <- function(...) {
#' @description
#' `r lifecycle::badge("deprecated")`
#'
#' Use PM_build instead.
#' Building is no longer required; models are compiled just-in-time at run time.
#' @param ... Not used
#' @author Michael Neely
#' @keywords internal
#' @export
PMbuild <- function(...) {
lifecycle::deprecate_warn("2.1.0", "PMbuild()", details = "Use PM_build() to compile Rust.")
lifecycle::deprecate_warn("2.1.0", "PMbuild()", details = "Building is no longer required; models are compiled just-in-time at run time.")
}


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