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* Increase version number and update changelog (#455) * Bugfixes 4th sep (#460) * Fix normalisation in rice model Closes #459 * Remove three spin anaysis Closes #427 * Improved installation instructions * Caution about difference in definition of cost function Closes #450 * Bump Version * Bug for non linearly constrained problems When a problem is not linearly constrained and not non-negative, the linear solver outputs a result class not the solution. * Keeping changelog up-to date * Fixing Sophgrid bug (#464) * Fixing Sophgrid bug * Add unit test for sophgrid * Update changelog.rst for new release (#466)
* Fixing Sophgrid bug * Add unit test for sophgrid * Minor doc update * Bump version Number * Remove unnecessary doc files * Update changelog
* Seperate Kinterpolator into its own function Interpolation in Scipy is very slow, currently the same interpolation is being rerun for every calculation of the dipolarkernal. This is now cached to speed it up. * Only run orientation selection on grid and integral based kernals This hunk of code is not needed when fresnel integrals are used so does not need to be evaluated * Update changelog
* Update for 3.12 * Updated workflows and changelog * Upload to 3.12
* Update for 3.12 * Updated workflows and changelog * Upload to 3.12 * Numpy 2.0 compatibility updates * Update Changelog
* Update for 3.12 * Updated workflows and changelog * Upload to 3.12 * Fix bug in regparam grid search Regparam would never build the grid correctly. Now using grid or Brent is automatically determined from number of elements in the regparamrange. * Add extra error messages * Update changelog * Updated Example * Updated test The test has been updated. The previous convergence criteria was unreliable and only worked based on a coincidence. * Prepare For Release * Remove duplicate python version
* Remove 3.8 Require Numpy 2.0 Co-authored-by: Stefan Stoll <stestoll@users.noreply.github.com>
* Added modelUncert for bootstrapped * Remove unused input * Always create modelUncert quantification * Allow bootstrap resampling to be variable in propagation * Update examples * Add test for modelUncert output * Minor docstring update * Bootrstap Uncertainty sampling reduction Reduces uncertainty calculation for bootstrapped uncertainties. Previously it was always 1000 samples. This saves around 4s, when using <100 samples. * Add model copying * General improvemements * Fixes issues with functions being deep copyied * Test update -`test_fit_model_confidence_intervals` increased the number of bootstraps so it passes -`test_fit_modelUncert` expanded to test the bootstrapped * Correct number of bootstrap samples * Fix gaussian normalisation issues * Bug fix in test * multi-guass_background fix removal * Fix example for latest matplotlib
- Fixes nOctants =0 and -1 - Adds some tests
* Increase version number and update changelog (#455) * Bugfixes 4th sep (#460) * Fix normalisation in rice model Closes #459 * Remove three spin anaysis Closes #427 * Improved installation instructions * Caution about difference in definition of cost function Closes #450 * Bump Version * Bug for non linearly constrained problems When a problem is not linearly constrained and not non-negative, the linear solver outputs a result class not the solution. * Keeping changelog up-to date * Fixing Sophgrid bug (#464) * Fixing Sophgrid bug * Add unit test for sophgrid * Update changelog.rst for new release (#466)
* Fixing Sophgrid bug * Add unit test for sophgrid * Minor doc update * Bump version Number * Remove unnecessary doc files * Update changelog
* Seperate Kinterpolator into its own function Interpolation in Scipy is very slow, currently the same interpolation is being rerun for every calculation of the dipolarkernal. This is now cached to speed it up. * Only run orientation selection on grid and integral based kernals This hunk of code is not needed when fresnel integrals are used so does not need to be evaluated * Update changelog
* Update for 3.12 * Updated workflows and changelog * Upload to 3.12
* Update for 3.12 * Updated workflows and changelog * Upload to 3.12 * Numpy 2.0 compatibility updates * Update Changelog
* Update for 3.12 * Updated workflows and changelog * Upload to 3.12 * Fix bug in regparam grid search Regparam would never build the grid correctly. Now using grid or Brent is automatically determined from number of elements in the regparamrange. * Add extra error messages * Update changelog * Updated Example * Updated test The test has been updated. The previous convergence criteria was unreliable and only worked based on a coincidence. * Prepare For Release * Remove duplicate python version
- Changed `UQresult`, when used for profile analysis, so that threshold can be supplied with parameters not with a function. - Changed the creation of `UQresult` in `profile_analysis.py` so that it supplies arguments not functions.
Including: - Function for dumping and reading from JSON strings. `dump_jsons` and `load_jsons` - Support for saving to HDF5, JSON, TOML - Example for saving and loading files
HKaras
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To allow for better archiving and sharing of FitResults
saveandloadfunctions have been implemented.Pickling which was the only option before is both insecure and not-stable.
This pull request closes #414