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Ensembl Project

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  1. ensembl-vep ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl 575 188

  2. VEP_plugins VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Perl 172 124

  3. WiggleTools WiggleTools Public

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

    C 154 25

  4. ensembl-rest ensembl-rest Public

    Language agnostic RESTful data access to Ensembl data over HTTP

    Perl 149 61

  5. ensembl ensembl Public

    The Ensembl Core Perl API and SQL schema

    Perl 85 77

  6. ensembl-pipeline ensembl-pipeline Public archive

    *DEPRECATED* Job management for the Ensembl Genebuild pipeline

    Perl 62 29

Repositories

Showing 10 of 217 repositories
  • ensembl-genes-nf Public

    Ensembl Genebuild NextFlow pipelines

    Ensembl/ensembl-genes-nf's past year of commit activity
    Nextflow 2 Apache-2.0 6 0 1 Updated Oct 1, 2026
  • ensembl-genes Public

    Python Ensembl Gene Annotation code source repository

    Ensembl/ensembl-genes's past year of commit activity
    Python 4 Apache-2.0 4 0 7 Updated Oct 1, 2026
  • ensembl-analysis Public

    Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

    Ensembl/ensembl-analysis's past year of commit activity
    Perl 18 Apache-2.0 36 0 3 Updated Oct 1, 2026
  • nextflow_modules Public

    A collection of shared Ensembl modules used in NextFlow pipelines

    Ensembl/nextflow_modules's past year of commit activity
    Nextflow 4 3 1 5 Updated Oct 1, 2026
  • ensembl-genomio Public

    Pipelines to turn basic genomic data into Ensembl cores and back

    Ensembl/ensembl-genomio's past year of commit activity
    Python 10 Apache-2.0 12 0 2 Updated Oct 1, 2026
  • Ensembl/ensembl-datacheck-py's past year of commit activity
    Python 2 Apache-2.0 6 0 3 Updated Oct 1, 2026
  • Ensembl/ensembl-variation-pipelines's past year of commit activity
    Python 0 Apache-2.0 5 0 11 Updated Oct 1, 2026
  • Ensembl/ensembl-genes-metadata's past year of commit activity
    TypeScript 1 Apache-2.0 2 3 2 Updated Oct 1, 2026
  • ensembl-py Public

    Python Ensembl code source repository

    Ensembl/ensembl-py's past year of commit activity
    Python 6 Apache-2.0 11 0 1 Updated Oct 1, 2026
  • ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Ensembl/ensembl-vep's past year of commit activity
    Perl 575 Apache-2.0 188 60 8 Updated Oct 1, 2026