Girder 5 upgrade 2026 - #443
Open
BryonLewis wants to merge 34 commits into
Open
Conversation
Integrate asset import options and dependency bumps from main while preserving Girder 5 upgrade changes (notifications, worker events, REST). Co-authored-by: Cursor <cursoragent@cursor.com>
…ata_ingest contains functions for metadata
Bumps [websocket-driver](https://github.com/faye/websocket-driver-node) from 0.7.4 to 0.7.5. - [Changelog](https://github.com/faye/websocket-driver-node/blob/main/CHANGELOG.md) - [Commits](faye/websocket-driver-node@0.7.4...0.7.5) --- updated-dependencies: - dependency-name: websocket-driver dependency-version: 0.7.5 dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [torch](https://github.com/pytorch/pytorch) from 2.12.0 to 2.13.0. - [Release notes](https://github.com/pytorch/pytorch/releases) - [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md) - [Commits](pytorch/pytorch@v2.12.0...v2.13.0) --- updated-dependencies: - dependency-name: torch dependency-version: 2.13.0 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps and [ws](https://github.com/websockets/ws). These dependencies needed to be updated together. Updates `ws` from 7.5.10 to 7.5.13 - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@7.5.10...7.5.13) Updates `ws` from 8.18.3 to 8.21.1 - [Release notes](https://github.com/websockets/ws/releases) - [Commits](websockets/ws@7.5.10...7.5.13) --- updated-dependencies: - dependency-name: ws dependency-version: 7.5.13 dependency-type: indirect - dependency-name: ws dependency-version: 8.21.1 dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Resolve dependency conflicts by taking main's axios and pillow bumps, keeping branch numpy pin, dropping yarn.lock, and regenerating locks. Co-authored-by: Cursor <cursoragent@cursor.com>
Bring in main commits since Jul 21 (dependency bumps, Slicer CLI UI updates, metadata mismatch fixes). Keep Girder 5 job-based metadata ingest, drop yarn.lock, and port DIVE_DatasetId matching into crud_metadata_ingest. Co-authored-by: Cursor <cursoragent@cursor.com>
Port combineMetadataFolders create/index support and import row summaries into the job-based DIVE metadata ingest path while keeping local-queue enqueue semantics from this branch. Co-authored-by: Cursor <cursoragent@cursor.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Replaces the #241 with this more updated version
TODO: